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Report for CCDS45124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45124.1 Public Homo sapiens 14 SYNE2 24 110 108 CCDS HistoryNCBI Gene:23224Re-query CCDS DB by CCDS ID:45124.1Re-query CCDS DB by GeneID:23224See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45124.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458046.6 ENSP00000391937.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458046.6Link to Ensembl Protein Viewer:ENSP00000391937.2Re-query CCDS DB by Nucleotide ID:ENST00000458046Re-query CCDS DB by Protein ID:ENSP00000391937
Original member Current member NCBI NM_182913.4 NP_878917.1 Accepted alive Link to Nucleotide Sequence:NM_182913.4Link to Protein Sequence:NP_878917.1Re-query CCDS DB by Nucleotide ID:NM_182913Re-query CCDS DB by Protein ID:NP_878917Link to BLAST:NP_878917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_878917.1 556 Q8WXH0-5 556 100% 0 0

Chromosomal Locations for CCDS 45124.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 64214236 64214470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64215286 64215354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64216248 64216387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64218398 64218512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64219208 64219410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64220437 64220637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64221534 64221704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64223189 64223380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64224461 64224547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64224996 64225045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 64225319 64225526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGGAAGACCCCAGAGAAATCCAGACTGATTCTTGGCGTAAACGGGGAGAGAGCGAGGAACCGTCATCTC
CTCAGTCCCTGTGTCATCTAGTGGCCCCAGGGCACGAGCGGTCTGGCTGCGAGACCCCTGTCAGCGTGGA
CTCCATCCCCCTGGAGTGGGACCACACAGGCGACGTGGGGGGCTCCTCCTCTCACGAAGAGGACGAGGAG
GGCCCATACTACAGCGCACTGTCAGATGTAGAAATCCCTGAAAATCCTGAGGCATATCTTAAAATGACCA
CAAAAACTTTGAAAGCGTCTTCTGGTAAATCCATTTCGGATGGCCACTCGTGGCATGTTCCCGACAGCCC
TTCCTGTCCCGAGCATCACTACAAGCAAATGGAAGGTGACAGGAATGTTCCACCTGTTCCCCCTGCGTCC
AGCACCCCTTATAAACCACCCTATGGAAAGCTACTATTACCTCCAGGCACGGATGGTGGCAAAGAAGGCC
CGCGAGTCCTGAATGGCAACCCACAGCAGGAAGACGGGGGACTGGCCGGTATCACAGAGCAGCAGTCAGG
TGCCTTCGACAGATGGGAGATGATTCAAGCACAGGAGCTTCACAATAAGCTCAAAATAAAACAAAATTTG
CAACAGCTGAACTCTGATATCAGCGCCATCACTACTTGGCTGAAAAAAACTGAAGCAGAGCTGGAAATGT
TAAAGATGGCAAAGCCTCCCTCTGATATCCAGGAAATAGAACTGAGAGTGAAGAGACTGCAGGAGATACT
GAAAGCCTTTGACACTTACAAGGCATTAGTGGTCTCTGTCAACGTGAGCAGCAAGGAATTTCTGCAAACC
GAGAGCCCCGAATCCACAGAGCTCCAAAGTAGACTCCGCCAGCTGAGCCTGCTCTGGGAAGCAGCACAGG
GCGCAGTGGACAGCTGGAGAGGGGGCTTACGACAGTCGCTCATGCAGTGCCAGGGCTCTAAGACACGGCC
GCGCTCTGATGTGTTGTTTTTTAAGGACTTCCACCAGTTGAGTCAAAATCTGCTGCTGTGGTTAGCGAGT
GCCAAGAACCGGAGGCAGAAGGCTCATGTCACCGATCCAAAGGCAGACCCCCGGGCTCTCCTAGAGTGTC
GGAGGGAACTAATGCAACTGGAAAAGGAGCTGGTAGAACGTCAACCTCAAGTGGACATGTTACAGGAGAT
TTCAAACAGCCTTCTCATTAAGGGACATGGAGAAGACTGTATTGAAGCTGAAGAAAAGGTGCATGTTATT
GAGAAGAAACTCAAACAGTTACGGGAGCAAGTGTCCCAAGATTTAATGGCCTTGCAGGGAACCCAGAACC
CAGCCTCACCCCTGCCCAGCTTCGACGAGGTAGACTCGGGGGACCAGCCTCCTGCAACATCCGTGCCAGC
TCCCCGAGCAAAGCAGTTCAGAGCAGTGAGAACTACAGAAGGCGAGGAGGAGACAGAGAGCAGGGTCCCC
GGCAGCACACGGCCACAGCGCTCCTTCCTCTCAAGGGTGGTCCGGGCAGCCCTACCCCTGCAGCTGCTCC
TCCTGCTGCTGCTGCTCCTGGCCTGCCTGCTGCCCTCCTCCGAAGAAGACTACAGCTGCACTCAGGCCAA
CAACTTTGCCCGGTCCTTTTACCCCATGCTGAGGTACACCAATGGGCCACCCCCCACATAG

Translation (556 aa):
MEDPREIQTDSWRKRGESEEPSSPQSLCHLVAPGHERSGCETPVSVDSIPLEWDHTGDVGGSSSHEEDEE
GPYYSALSDVEIPENPEAYLKMTTKTLKASSGKSISDGHSWHVPDSPSCPEHHYKQMEGDRNVPPVPPAS
STPYKPPYGKLLLPPGTDGGKEGPRVLNGNPQQEDGGLAGITEQQSGAFDRWEMIQAQELHNKLKIKQNL
QQLNSDISAITTWLKKTEAELEMLKMAKPPSDIQEIELRVKRLQEILKAFDTYKALVVSVNVSSKEFLQT
ESPESTELQSRLRQLSLLWEAAQGAVDSWRGGLRQSLMQCQGSKTRPRSDVLFFKDFHQLSQNLLLWLAS
AKNRRQKAHVTDPKADPRALLECRRELMQLEKELVERQPQVDMLQEISNSLLIKGHGEDCIEAEEKVHVI
EKKLKQLREQVSQDLMALQGTQNPASPLPSFDEVDSGDQPPATSVPAPRAKQFRAVRTTEGEEETESRVP
GSTRPQRSFLSRVVRAALPLQLLLLLLLLLACLLPSSEEDYSCTQANNFARSFYPMLRYTNGPPPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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