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Report for CCDS58331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58331.1 Public Homo sapiens 14 SLIRP 24 110 108 CCDS HistoryNCBI Gene:81892Re-query CCDS DB by CCDS ID:58331.1Re-query CCDS DB by GeneID:81892See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58331.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238688.9 ENSP00000238688.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000238688.9Link to Ensembl Protein Viewer:ENSP00000238688.5Re-query CCDS DB by Nucleotide ID:ENST00000238688Re-query CCDS DB by Protein ID:ENSP00000238688
Original member Current member NCBI NM_001267863.1 NP_001254792.1 Accepted alive Link to Nucleotide Sequence:NM_001267863.1Link to Protein Sequence:NP_001254792.1Re-query CCDS DB by Nucleotide ID:NM_001267863Re-query CCDS DB by Protein ID:NP_001254792Link to BLAST:NP_001254792.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254792.1 107 Q9GZT3-2 107 100% 0 0

Chromosomal Locations for CCDS 58331.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 77708112 77708208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77710838 77710896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77715772 77715879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77717502 77717561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (324 nt):
ATGGCGGCCTCAGCAGCGAGAGGTGCTGCGGCGCTGCGTAGAAGTATCAATCAGCCGGTTGCTTTTGTGA
GAAGAATTCCTTGGACTGCGGCGTCGAGTCAGCTGAAAGAACACTTTGCACAGTTCGGCCATGTCAGAAG
GTGCATTTTACCTTTTGACAAGGAGACTGGCTTTCACAGAGGTTTGGGTTGGGTTCAGTTTTCTTCAGAA
GAAGGACTTCGGAATGCACTACAACAGGAAAATCATATTATAGATGGAGTAAAGGTTCACACTAGAAGGC
CAAAACTTCCGCAAACATCTGATGATGAAAAGAAAGATTTTTGA

Translation (107 aa):
MAASAARGAAALRRSINQPVAFVRRIPWTAASSQLKEHFAQFGHVRRCILPFDKETGFHRGLGWVQFSSE
EGLRNALQQENHIIDGVKVHTRRPKLPQTSDDEKKDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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