NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10542.1 Public Homo sapiens 16 TEKT5 24 110 108 CCDS HistoryNCBI Gene:146279Re-query CCDS DB by CCDS ID:10542.1Re-query CCDS DB by GeneID:146279See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10542.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283025.7 ENSP00000283025.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283025.7Link to Ensembl Protein Viewer:ENSP00000283025.2Re-query CCDS DB by Nucleotide ID:ENST00000283025Re-query CCDS DB by Protein ID:ENSP00000283025
Original member Current member NCBI NM_144674.2 NP_653275.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144674.2Link to Protein Sequence:NP_653275.1Re-query CCDS DB by Nucleotide ID:NM_144674Re-query CCDS DB by Protein ID:NP_653275Link to BLAST:NP_653275.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653275.1 485 Q96M29 485 100% 0 0

Chromosomal Locations for CCDS 10542.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10627583 10627799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10635764 10635918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10675959 10676181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10681993 10682136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10689253 10689323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10689942 10690025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10694310 10694873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGAGTTTCTTGGGACTACTCAGACCGCCAGTTACTGTGGTCCCAAGAAATGCTGTGGCTTGACCTCAC
TGCCAGCTGTACAGGCGCCAGTGATCCAGGAATGCTATCAGCCCTACTACCTGCCCGGGTACCGCTACCT
CAATTCATGGAGGCCTAGCCTCTTCTACAAGATAGCCAACGTCCAGACCTGCCCGGACGAGAGCACCAGT
ACCCTGCGGCCGCCCACCATCCTGCCCACACTGCGCTCCGCACTCTTCTCTCGCTATAGCCCCCACGACT
GGGACCAGTCCAACCAGCTGCAGGTGCGTGGGGCCGAGGCCTCCCGGCTGTGGGCCAGCCGGCTGACGGA
TGACTCCATGAGGCTCTTGCAGGACAAGGACCAGCTGACGCACCAGATGCAGGAGGGCACCTGCCGGAAC
CTGGGCCAGAGGCTGTCGGACATTGGCTTCTGGAAGTCAGAGCTGAGCTATGAGCTGGACAGGCTTCTGA
CTGAGAACCAGAACTTGGAGACGGTCAAGAGGCGGCTGGAGTGCGCGGCCAATGAGGTGAACTGCCCATT
GCAGGTGGCCTTGGAGTGTCTGTACCATCGAGAGAAGAGGATTGGGATTGATTTGGTCCATGACAACGTG
GAGAAAAACCTTATCCGGGAAGTGGATTTGCTAAAATGTTGCCAAGAACAGATGAGAAAATTAGCTCAAA
GAATTGATATCCAGATGCGGGATAACCGGGATGCTCAGCACGTGCTGGAGAGGGACCTCGAAGACAAAAG
CTCGGCCCAGTGTATCGATGAGAAGTGCTTTAACCTGAGAAATACGTCAGACTGCATCAGCTTCTTCCAC
GGCATGGAGAAAATTGACGGCACGATCTCCGTACCTGAGACCTGGGCCAAGTTCAGTAACGACAACATCA
AACACTCTCAGAACATGCGGGCCAACTCCATCCAGCTGCGGGAGGAGGCGGAGCACCTCTTTGAGACCTT
GTCGGATCAGATGTGGAGGCAGTTCACAGACACCAACCTGGCCTTCAACGCCCGCATCTCTGAGGTGACG
GATGTGAAGAATAAGCTGCAGACGCAGCTGGCGAAGACGCTGCAGGAGATCTTCCAGGCCGAGAACACCA
TCATGCTGCTGGAAAGGTCCATCATGGCCAAGGAGGGCCCGCTGAAGGTGGCCCAGACAAGGCTGGAGTG
CCGGACCCGGCGCCCCAACATGGAGCTGTGCAGGGACATCCCGCAGTTGAAGCTGGTGAACGAGGTGTTC
ACCATCGACGACACCCTGCAGACCCTCAAGCTGCGGCTGCGGGAGACACAGGACACGCTGCAGCTGCTGG
TCATGACCAAGTGCCGGCTGGAGCACGAGCTCGCCATCAAGGCCAACACCCTCTGCATCGACAAGGAGAA
GTGCATGGGCATGCGTAAGACCTTCCCCTGCACCCCGCGCCTGGTGGGCCACACCTGA

Translation (485 aa):
MEFLGTTQTASYCGPKKCCGLTSLPAVQAPVIQECYQPYYLPGYRYLNSWRPSLFYKIANVQTCPDESTS
TLRPPTILPTLRSALFSRYSPHDWDQSNQLQVRGAEASRLWASRLTDDSMRLLQDKDQLTHQMQEGTCRN
LGQRLSDIGFWKSELSYELDRLLTENQNLETVKRRLECAANEVNCPLQVALECLYHREKRIGIDLVHDNV
EKNLIREVDLLKCCQEQMRKLAQRIDIQMRDNRDAQHVLERDLEDKSSAQCIDEKCFNLRNTSDCISFFH
GMEKIDGTISVPETWAKFSNDNIKHSQNMRANSIQLREEAEHLFETLSDQMWRQFTDTNLAFNARISEVT
DVKNKLQTQLAKTLQEIFQAENTIMLLERSIMAKEGPLKVAQTRLECRTRRPNMELCRDIPQLKLVNEVF
TIDDTLQTLKLRLRETQDTLQLLVMTKCRLEHELAIKANTLCIDKEKCMGMRKTFPCTPRLVGHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH