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Report for CCDS76862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76862.1 Public Homo sapiens 16 ITFG1 24 110 108 CCDS HistoryNCBI Gene:81533Re-query CCDS DB by CCDS ID:76862.1Re-query CCDS DB by GeneID:81533See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76862.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544001.6 ENSP00000441062.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544001.6Link to Ensembl Protein Viewer:ENSP00000441062.2Re-query CCDS DB by Nucleotide ID:ENST00000544001Re-query CCDS DB by Protein ID:ENSP00000441062
Original member Current member NCBI NM_001305002.2 NP_001291931.1 Accepted alive Link to Nucleotide Sequence:NM_001305002.2Link to Protein Sequence:NP_001291931.1Re-query CCDS DB by Nucleotide ID:NM_001305002Re-query CCDS DB by Protein ID:NP_001291931Link to BLAST:NP_001291931.1

Chromosomal Locations for CCDS 76862.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 47155768 47155778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47158873 47158934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47161750 47161832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47162540 47162664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47218868 47218946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47237965 47238008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47258632 47258740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47260545 47260695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47311240 47311412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47313729 47313823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47365788 47365869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47375876 47375940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47428804 47428898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47451396 47451470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47452733 47452790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 47454013 47454100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGATGTCCTTCTGACATATCTTCCCAAAAATTATGCCAAGAGTGAATTAGGAGCTGTTATCTTCTGGG
GACAAAATCAAACATTAGATCCTAACAATATGACCATACTCAATAGGACTTTTCAAGATGAGCCACTAAT
TATGGATTTCAATGGTGATCTAATTCCTGATATTTTTGGTATCACAAATGAATCCAACCAGCCACAGATA
CTATTAGGAGGGAATTTATCATGGCATCCAGCATTGACCACTACAAGTAAAATGCGAATTCCACATTCTC
ATGCATTTATTGATCTGACTGAAGATTTTACAGCAGATTTATTCCTGACGACATTGAATGCCACCACTAG
TACCTTCCAGTTTGAAATATGGGAAAATTTGGATGGAAACTTCTCTGTCAGTACTATATTGGAAAAACCT
CAAAATATGATGGTGGTTGGACAGTCAGCATTTGCAGACTTTGATGGAGATGGACACATGGATCATTTAC
TGCCAGGCTGTGAAGATAAAAATTGCCAAAAGAGTACCATCTACTTAGTGAGATCTGGGATGAAGCAGTG
GGTTCCAGTCCTACAAGATTTCAGCAATAAGGGCACACTCTGGGGCTTTGTGCCATTTGTGGATGAACAG
CAACCAACTGAAATACCAATTCCAATTACCCTTCATATTGGAGACTACAATATGGATGGCTATCCAGACG
CTCTGGTCATACTAAAGAACACATCTGGAAGCAACCAGCAGGCCTTTTTACTGGAGAACGTCCCTTGTAA
TAATGCAAGCTGTGAAGAGGCGCGTCGAATGTTTAAAGTCTACTGGGAGCTGACAGACCTAAATCAAATT
AAGGATGCCATGGTTGCCACCTTCTTTGACATTTACGAAGATGGAATCTTGGACATTGTAGTGCTAAGTA
AAGGATATACAAAGAATGATTTTGCCATTCATACACTAAAAAATAACTTTGAAGCAGATGCTTATTTTGT
TAAAGTTATTGTTCTTAGTGGTCTGTGTTCTAATGACTGTCCTCGTAAGATAACACCCTTTGGAGTGAAT
CAACCTGGACCTTATATCATGTATACAACTGTAGATGCAAATGGGTATCTGAAAAATGGATCAGCTGGCC
AACTCAGCCAATCCGCACATTTAGCTCTCCAACTACCATACAACGTGCTTGGTTTAGGTCGGAGCGCAAA
TTTTCTTGACCATCTCTACGTTGGTATTCCCCGTCCATCTGGAGAAAAATCTATACGAAAACAAGAGTGG
ACTGCAATCATTCCAAATTCCCAGCTAATTGTCATTCCATACCCTCACAATGTCCCTCGAAGCTCTCATC
GGTGTCTGTGTTTTCATCTTGGCAATAATTGGCATTTTACATTGGCAGGAAAAGAAAGCAGATGA

Translation (464 aa):
MDVLLTYLPKNYAKSELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMDFNGDLIPDIFGITNESNQPQI
LLGGNLSWHPALTTTSKMRIPHSHAFIDLTEDFTADLFLTTLNATTSTFQFEIWENLDGNFSVSTILEKP
QNMMVVGQSAFADFDGDGHMDHLLPGCEDKNCQKSTIYLVRSGMKQWVPVLQDFSNKGTLWGFVPFVDEQ
QPTEIPIPITLHIGDYNMDGYPDALVILKNTSGSNQQAFLLENVPCNNASCEEARRMFKVYWELTDLNQI
KDAMVATFFDIYEDGILDIVVLSKGYTKNDFAIHTLKNNFEADAYFVKVIVLSGLCSNDCPRKITPFGVN
QPGPYIMYTTVDANGYLKNGSAGQLSQSAHLALQLPYNVLGLGRSANFLDHLYVGIPRPSGEKSIRKQEW
TAIIPNSQLIVIPYPHNVPRSSHRCLCFHLGNNWHFTLAGKESR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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