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Report for CCDS10983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10983.1 Public Homo sapiens 16 SPATA33 24 110 108 CCDS HistoryNCBI Gene:124045Re-query CCDS DB by CCDS ID:10983.1Re-query CCDS DB by GeneID:124045See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10983.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301031.8 ENSP00000301031.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301031.8Link to Ensembl Protein Viewer:ENSP00000301031.4Re-query CCDS DB by Nucleotide ID:ENST00000301031Re-query CCDS DB by Protein ID:ENSP00000301031
Original member Current member NCBI NM_153025.3 NP_694570.1 Accepted alive Link to Nucleotide Sequence:NM_153025.3Link to Protein Sequence:NP_694570.1Re-query CCDS DB by Nucleotide ID:NM_153025Re-query CCDS DB by Protein ID:NP_694570Link to BLAST:NP_694570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694570.1 139 Q96N06-1 139 100% 0 0

Chromosomal Locations for CCDS 10983.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89657802 89657835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89658248 89658421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89669286 89669497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGTGACGCACGCCGCTGGCGCGAGGACCTTTTGTGAGGAGCAAAAGAAGGGATCCACCTATTCAGTTC
CAAAATCTAAGGAGAAGTTGATGGAGAAGCATTCCCAGGAAGCCAGGCAGGCAGACAGGGAGTCGGAGAA
GCCTGTGGACAGCCTCCACCCGGGGGCCGGGACAGCCAAGCACCCGCCGCCGGCAGCTTCGCTGGAAGAG
AAACCTGATGTAAAGCAAAAGTCCAGCAGGAAGAAAGTGGTCGTTCCACAGATCATCATCACGCGAGCGT
CGAATGAGACGCTAGTCAGTTGCAGTTCCAGCGGGAGTGACCAGCAGAGAACCATTCGGGAGCCGGAGGA
CTGGGGCCCCTACCGGCGGCACAGGAACCCCAGTACAGCAGACGCCTATAATTCACATCTCAAAGAATAA

Translation (139 aa):
MVTHAAGARTFCEEQKKGSTYSVPKSKEKLMEKHSQEARQADRESEKPVDSLHPGAGTAKHPPPAASLEE
KPDVKQKSSRKKVVVPQIIITRASNETLVSCSSSGSDQQRTIREPEDWGPYRRHRNPSTADAYNSHLKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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