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Report for CCDS11925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11925.1 Public Homo sapiens 18 SLC14A1 24 110 108 CCDS HistoryNCBI Gene:6563Re-query CCDS DB by CCDS ID:11925.1Re-query CCDS DB by GeneID:6563See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11925.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321925.9 ENSP00000318546.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321925.9Link to Ensembl Protein Viewer:ENSP00000318546.4Re-query CCDS DB by Nucleotide ID:ENST00000321925Re-query CCDS DB by Protein ID:ENSP00000318546
Original member Current member EBI ENST00000586951.6 ENSP00000465702.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586951.6Link to Ensembl Protein Viewer:ENSP00000465702.2Re-query CCDS DB by Nucleotide ID:ENST00000586951Re-query CCDS DB by Protein ID:ENSP00000465702
Original member Current member EBI ENST00000586142.5 ENSP00000470476.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586142.5Link to Ensembl Protein Viewer:ENSP00000470476.1Re-query CCDS DB by Nucleotide ID:ENST00000586142Re-query CCDS DB by Protein ID:ENSP00000470476
Original member Current member NCBI NM_001146036.3 NP_001139508.2 Accepted alive Link to Nucleotide Sequence:NM_001146036.3Link to Protein Sequence:NP_001139508.2Re-query CCDS DB by Nucleotide ID:NM_001146036Re-query CCDS DB by Protein ID:NP_001139508Link to BLAST:NP_001139508.2
Original member Current member NCBI NM_015865.7 NP_056949.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015865.7Link to Protein Sequence:NP_056949.4Re-query CCDS DB by Nucleotide ID:NM_015865Re-query CCDS DB by Protein ID:NP_056949Link to BLAST:NP_056949.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139508.2 389 Q13336-1 389 100% 0 0
NP_056949.4 389 Q13336-1 389 100% 0 0

Chromosomal Locations for CCDS 11925.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 45730321 45730471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45731015 45731204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45734274 45734402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45736456 45736648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45739163 45739310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45739528 45739662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45748376 45748425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45749778 45749951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGAGGACAGCCCCACTATGGTTAGAGTGGACAGCCCCACTATGGTTAGGGGTGAAAACCAGGTTTCGC
CATGTCAAGGGAGAAGGTGCTTCCCCAAAGCTCTTGGCTATGTCACCGGTGACATGAAAGAACTTGCCAA
CCAGCTTAAAGACAAACCCGTGGTGCTCCAGTTCATTGACTGGATTCTCCGGGGCATATCCCAAGTGGTG
TTCGTCAACAACCCCGTCAGTGGAATCCTGATTCTGGTAGGACTTCTTGTTCAGAACCCCTGGTGGGCTC
TCACTGGCTGGCTGGGAACAGTGGTCTCCACTCTGATGGCCCTCTTGCTCAGCCAGGACAGGTCATTAAT
AGCATCTGGGCTCTATGGCTACAATGCCACCCTGGTGGGAGTACTCATGGCTGTCTTTTCGGACAAGGGA
GACTATTTCTGGTGGCTGTTACTCCCTGTATGTGCTATGTCCATGACTTGCCCAATTTTCTCAAGTGCAT
TGAATTCCATGCTCAGCAAATGGGACCTCCCCGTCTTCACCCTCCCTTTCAACATGGCGTTGTCAATGTA
CCTTTCAGCCACAGGACATTACAATCCATTCTTTCCAGCCAAACTGGTCATACCTATAACTACAGCTCCA
AATATCTCCTGGTCTGACCTCAGTGCCCTGGAGTTGTTGAAATCTATACCAGTGGGAGTTGGTCAGATCT
ATGGCTGTGATAATCCATGGACAGGGGGCATTTTCCTGGGAGCCATCCTACTCTCCTCCCCACTCATGTG
CCTGCATGCTGCCATAGGATCATTGCTGGGCATAGCAGCGGGACTCAGTCTTTCAGCCCCATTTGAGGAC
ATCTACTTTGGACTCTGGGGTTTCAACAGCTCTCTGGCCTGCATTGCAATGGGAGGAATGTTCATGGCGC
TCACCTGGCAAACCCACCTCCTGGCTCTTGGCTGTGCCCTGTTCACGGCCTATCTTGGAGTCGGCATGGC
AAACTTTATGGCTGAGGTTGGATTGCCAGCTTGTACCTGGCCCTTCTGTTTGGCCACGCTATTGTTCCTC
ATCATGACCACAAAAAATTCCAACATCTACAAGATGCCCCTCAGTAAAGTTACTTATCCTGAAGAAAACC
GCATCTTCTACCTGCAAGCCAAGAAAAGAATGGTGGAAAGCCCTTTGTGA

Translation (389 aa):
MEDSPTMVRVDSPTMVRGENQVSPCQGRRCFPKALGYVTGDMKELANQLKDKPVVLQFIDWILRGISQVV
FVNNPVSGILILVGLLVQNPWWALTGWLGTVVSTLMALLLSQDRSLIASGLYGYNATLVGVLMAVFSDKG
DYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAP
NISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFED
IYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFL
IMTTKNSNIYKMPLSKVTYPEENRIFYLQAKKRMVESPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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