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Report for CCDS11940.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11940.2 Public Homo sapiens 18 CFAP53 24 110 108 CCDS HistoryNCBI Gene:220136Re-query CCDS DB by CCDS ID:11940.2Re-query CCDS DB by GeneID:220136See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11940.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398545.5 ENSP00000381553.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398545.5Link to Ensembl Protein Viewer:ENSP00000381553.3Re-query CCDS DB by Nucleotide ID:ENST00000398545Re-query CCDS DB by Protein ID:ENSP00000381553
Original member Current member NCBI NM_145020.5 NP_659457.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145020.5Link to Protein Sequence:NP_659457.2Re-query CCDS DB by Nucleotide ID:NM_145020Re-query CCDS DB by Protein ID:NP_659457Link to BLAST:NP_659457.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659457.2 514 Q96M91 514 100% 0 0

Chromosomal Locations for CCDS 11940.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 50227381 50227609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50238603 50238705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50242900 50243116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50250758 50250976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50251481 50251784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50261064 50261237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50261990 50262219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 50266336 50266404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGTACAGCCAGCGGTTTGGCACCGTACAGCGGGAGGTTAAGGGCCCCACCCCCAAAGTGGTGATCGTGA
GATCCAAGCCTCCTAAAGGCCAAGGAGCTGAGCACCATCTAGAAAGAATCCGACGCAGCCATCAGAAGCA
TAATGCTATTTTGGCTTCCATTAAGTCAAGTGAGCGGGATCGCTTGAAAGCTGAGTGGGACCAGCACAAT
GACTGCAAGATTTTGGACAGCCTTGTGCGAGCAAGAATCAAGGATGCTGTGCAAGGGTTTATCATTAACA
TTGAAGAAAGACGAAATAAGCTACGTGAGCTTTTAGCATTAGAAGAAAATGAGTATTTTACAGAAATGCA
ATTGAAGAAAGAAACCATTGAGGAGAAAAAAGATAGGATGAGAGAGAAAACTAAATTACTAAAAGAGAAG
AATGAAAAAGAGAGGCAGGATTTTGTGGCTGAAAAGCTAGACCAGCAATTCAGGGAACGCTGTGAGGAGC
TCCGTGTTGAATTGTTATCTATCCATCAGAAGAAGGTGTGTGAGGAGCGGAAAGCACAGATTGCATTTAA
TGAGGAGCTGAGCAGGCAAAAGCTGGTGGAAGAGCAGATGTTCTCCAAACTCTGGGAGGAAGACCGATTA
GCCAAGGAAAAGCGAGAAGCCCAAGAGGCGAGGAGACAGAAAGAGCTGATGGAGAACACACGCCTGGGGC
TGAATGCCCAGATCACCAGCATCAAGGCACAAAGGCAGGCGACACAGCTGCTGAAGGAAGAGGAGGCACG
CCTTGTGGAAAGTAACAACGCACAGATTAAACATGAGAATGAACAGGATATGCTAAAGAAACAGAAGGCA
AAGCAGGAAACTAGGACCATTTTGCAAAAAGCCCTACAAGAGAGGATAGAACATATTCAGCAGGAATACA
GAGACGAACAGGACTTGAACATGAAGCTCGTGCAAAGGGCCCTTCAAGACTTACAGGAAGAGGCAGATAA
AAAGAAACAAAAAAGAGAAGATATGATAAGAGAACAGAAGATATACCATAAATATTTGGCACAGAGACGT
GAGGAAGAAAAAGCTCAGGAGAAAGAATTTGACAGAATATTAGAGGAAGACAAGGCAAAGAAGTTGGCTG
AGAAGGACAAGGAGCTGAGACTTGAAAAGGAGGCAAGGAGACAGCTTGTGGATGAGGTCATGTGTACAAG
AAAACTTCAAGTTCAAGAAAAGTTGCAACGAGAAGCTAAAGAACAGGAAGAACGTGCTATGGAACAGAAA
CACATAAATGAAAGTCTTAAAGAACTTAACTGTGAAGAGAAGGAGAATTTTGCAAGACGCCAACGTTTAG
CCCAGGAGTACAGGAAGCAACTTCAGATGCAAATCGCCTACCAGCAGCAGTCCCAAGAAGCAGAGAAGGA
AGAGAAACGCCGAGAGTTTGAAGCAGGTGTAGCAGCAAACAAGATGTGTTTGGACAAGGTCCAGGAGGTC
CTGTCCACCCATCAAGTGCTGCCTCAAAACATTCATCCCATGCGCAAGGCATGCCCCAGTAAGCTTCCAC
CGTAG

Translation (514 aa):
MYSQRFGTVQREVKGPTPKVVIVRSKPPKGQGAEHHLERIRRSHQKHNAILASIKSSERDRLKAEWDQHN
DCKILDSLVRARIKDAVQGFIINIEERRNKLRELLALEENEYFTEMQLKKETIEEKKDRMREKTKLLKEK
NEKERQDFVAEKLDQQFRERCEELRVELLSIHQKKVCEERKAQIAFNEELSRQKLVEEQMFSKLWEEDRL
AKEKREAQEARRQKELMENTRLGLNAQITSIKAQRQATQLLKEEEARLVESNNAQIKHENEQDMLKKQKA
KQETRTILQKALQERIEHIQQEYRDEQDLNMKLVQRALQDLQEEADKKKQKREDMIREQKIYHKYLAQRR
EEEKAQEKEFDRILEEDKAKKLAEKDKELRLEKEARRQLVDEVMCTRKLQVQEKLQREAKEQEERAMEQK
HINESLKELNCEEKENFARRQRLAQEYRKQLQMQIAYQQQSQEAEKEEKRREFEAGVAANKMCLDKVQEV
LSTHQVLPQNIHPMRKACPSKLPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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