CCDS Report for Consensus CDS

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Report for CCDS46095.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
46095.1	Public	Homo sapiens	19	SRRM5	24	110	108

Public Note for CCDS 46095.1

The 5'-most start codon based on available transcript data is represented in this CCDS. It should be noted that a possible upstream start codon, which is moderately well-conserved, is present. The use of this upstream start codon would result in a protein that is 15 aa longer at the N-terminus. However, other than AK297891.1, which is a read-through transcript from the upstream ZNF576 locus, there are no human or homologous transcripts supporting extension to this upstream start codon. The 15 aa extension is therefore not included in this CCDS representation.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46095.1

Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status
EBI	ENST00000417606.3	ENSP00000414512.1	MANE Select	Accepted	alive
EBI	ENST00000607544.1	ENSP00000476253.1		Accepted	alive
NCBI	NM_001145641.2	NP_001139113.1	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001139113.1	715	B3KS81	715	100%	0	0

Chromosomal Locations for CCDS 46095.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)

Genome Browser links:

Chromosome	Start	Stop	Links
19	43612122	43614269

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGTCTTCACCTAAGAGATCTTCAAAGCCCAGTATGTCTCTGGCACCCAGTGGATCCTCCATGCCCACTG CGGATCCCAAGCCTCCTGCCTCCTTGAAGTCCACCAAATCAGCAACACCCAACAGATCCTTAGTGCCCAC CAAACCAGCGACATCCCGTAACTCAGTCATGAGCCCAAGCAGTTCCAAGTCCACCAAATCGACCAGTACA AAAAGAGCCCCTTCTAACCGGCCCAGCAGCAGGTCCCGAGTCCGCAGCAAAGCAAGAACACCCAGCAGGG TGAGCACCGACACCAGGACCAGCAAAGCCAGCAAGGCCAGCGACGTGAGATGCCACCAGCGGAGGGGCAC ACACAGCCGGGGTAGGACACCTGGCAGAAGGGGAAGCCGCAGCTCCAAGAGGTCACCCAGCAGGGCCAGC ACTCCTGGCAGGATAAGAACTCATGGTGCCAGACCAGGCATGGCCAGCAGGGTGAGAACTCCCACTTCAC AGCAAAAAGGGAGCCGGGGAAAGAGTTACGGCCGGCCTAGAACCAGCAACAGGGAAAGGAGTGACAGCCA GCCTAGAAATCTGAGCAAGAAGAGTTACCGCCCACCAGGAGGCTCAGGTATAGGGAGGAGTTCCGAGCTG GCTGTAACTCCCAGTACAGCCAAGTGTCAAACCCCGACTGGAATTCCCTCCAAGGAGAAGAGTGACAACC CATCTCCATCCTCATCAAGGAAGGTGAAGAGCTACGGTCAGATGATCATCCCCAGTAGGGAAAAGAGTTA CAGCCCCACTGAAATGTCCAGCAGGGTCAAGAGTTATAACCAGGCCAGCACCCGCAGCAGGCCGCAAAGT CACAGCCAATCTAGAAGCCCCAGAAGGTCAAGAAGTGGCAGTCAGAAGAGGACGCACAGCAGAGTGAGAA GTCACAGTTGGAAGAGAAACCATAGCAGGGCAAGAAGTCGCACCCGGAAGGGAATTCTGAGCCAGATGGG AAGACACAGCCAGTCTAGAAGCCACAGCAAGGGGAAAAGTCAAAACCAATCTAGAACCCCCAGAAGAGGA AGAAGTCACAACTGGTCTAGAAACCCCAGCAAGGAAAGAAGTCATAGCCATTCCAGAAGCTCCAGCAAAG AGAGAGATCACAGGGGATCTAGCAGCCCCAGGAAGGAGAGTGGTCGCAGTCAATCAGGAAGCCCCAACAA GCAGAGAGATCACAGCCGATCTAGAAGTCCCAACAAGGCGAGAGATCGCAGCCGATCTAGAAGTCCCTAC AAGGCGAGAGATCGCAGCCGATCTAGAAGTCCCAACAAGGCGAGAGATTGCAGCCGATCTAGAAGTCCCT ACAAGGCGAGAGATCGCAGCCGATCTAGAAGTCCCAACAAGGCAAGAGATCATAGCCGATCTAGAAGTCC CAACAAGGCGAGAGATCGCAGCCGATCTAGAAGCCCCAGCAAGGAAAGAGATCACAGCCAACTTGGAAGC CCCAGCAAAGAGAGAGATCACAGACGATCTAGAAGCCCCAGCAAGGAGAGACAGTGCAGACAATCTAGAA GCTCCAGCAAAGAGAGAGATCACAGACGATCTAGAAGCCCCAGCAAGGAGAGACAGCGCAGACAATCTAG AAGCCCCAACAAGGAGAGAGATCGCAGCCAATCTAGAAGCCCCAGCGAGGAGAGAGAGCACAGACAATCC AGAAGCCCCAGCAAAGAGAGAGATCGCAGACGATGGAGAAGCCCCAGCAAGGAGAGAGAGCGCAGACAAT CTAGAAGCTCCAGCGAGGAGAGAGATCACAGCCGATCTAGAAGCCCCAATAAGCAGAGTGGTTACAGTCG ACCTAGAGCCTCCAGCAAGGAGAAAGCTCATAGCCGATCTAGAACCCCCAGCAAAGAAGGAAATCATAGC CAATCTAGAACCTCTAGCAAGGAGAGCGACCCCAGTCAATCTACAGTCCCCAGAAGTCCCGACTGGAAGA GATCCCCTACTAGGACAAGCAGTCTCAGTCAGAATAGAACCCCTAGCAAGACAAGCAGCCACTCCCCATC AACATTTCCCAGTGGGGGCCAAACCCTAAGCCAGGATGACAGTCAAGCCGACGCCACCACCTCTAAGGCC ACCTTACCTGGGGAAAGGTCTTCATCATCTTCTTCCAAGCTGGCGTAG
Translation (715 aa):
MSSPKRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSSSKSTKSTST KRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPGRRGSRSSKRSPSRAS TPGRIRTHGARPGMASRVRTPTSQQKGSRGKSYGRPRTSNRERSDSQPRNLSKKSYRPPGGSGIGRSSEL AVTPSTAKCQTPTGIPSKEKSDNPSPSSSRKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQS HSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRG RSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPY KARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGS PSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQS RSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHS QSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKTSSHSPSTFPSGGQTLSQDDSQADATTSKA TLPGERSSSSSSKLA

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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