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Report for CCDS42627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42627.1 Public Homo sapiens 19 RDH13 24 110 108 CCDS HistoryNCBI Gene:112724Re-query CCDS DB by CCDS ID:42627.1Re-query CCDS DB by GeneID:112724See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42627.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396247.7 ENSP00000379547.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396247.7Link to Ensembl Protein Viewer:ENSP00000379547.2Re-query CCDS DB by Nucleotide ID:ENST00000396247Re-query CCDS DB by Protein ID:ENSP00000379547
Original member Current member EBI ENST00000610356.4 ENSP00000477732.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610356.4Link to Ensembl Protein Viewer:ENSP00000477732.1Re-query CCDS DB by Nucleotide ID:ENST00000610356Re-query CCDS DB by Protein ID:ENSP00000477732
Original member Current member NCBI NM_138412.4 NP_612421.1 Accepted alive Link to Nucleotide Sequence:NM_138412.4Link to Protein Sequence:NP_612421.1Re-query CCDS DB by Nucleotide ID:NM_138412Re-query CCDS DB by Protein ID:NP_612421Link to BLAST:NP_612421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612421.1 260 Q8NBN7-2 260 100% 0 0

Chromosomal Locations for CCDS 42627.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55045074 55045309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55047387 55047488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55048329 55048541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55048659 55048763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55056653 55056779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGGAGAAGTGTGAGGCGGCAGCAAAGGACATCCGCGGGGAGACCCTCAATCACCATGTCAACGCCCGGC
ACCTGGACTTGGCTTCCCTCAAGTCTATCCGAGAGTTTGCAGCAAAGATCATTGAAGAGGAGGAGCGAGT
GGACATTCTAATCAACAACGCGGGTGTGATGCGGTGCCCCCACTGGACCACCGAGGACGGCTTCGAGATG
CAGTTTGGCGTTAACCACCTGGGTCACTTTCTCTTGACAAACTTGCTGCTGGACAAGCTGAAAGCCTCAG
CCCCTTCGCGGATCATCAACCTCTCGTCCCTGGCCCATGTTGCTGGGCACATAGACTTTGACGACTTGAA
CTGGCAGACGAGGAAGTATAACACCAAAGCCGCCTACTGCCAGAGCAAGCTCGCCATCGTCCTCTTCACC
AAGGAGCTGAGCCGGCGGCTGCAAGGCTCTGGTGTGACTGTCAACGCCCTGCACCCCGGCGTGGCCAGGA
CAGAGCTGGGCAGACACACGGGCATCCATGGCTCCACCTTCTCCAGCACCACACTCGGGCCCATCTTCTG
GCTGCTGGTCAAGAGCCCCGAGCTGGCCGCCCAGCCCAGCACATACCTGGCCGTGGCGGAGGAACTGGCG
GATGTTTCCGGAAAGTACTTCGATGGACTCAAACAGAAGGCCCCGGCCCCCGAGGCTGAGGATGAGGAGG
TGGCCCGGAGGCTTTGGGCTGAAAGTGCCCGCCTGGTGGGCTTAGAGGCTCCCTCTGTGAGGGAGCAGCC
CCTCCCCAGATAA

Translation (260 aa):
MEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEM
QFGVNHLGHFLLTNLLLDKLKASAPSRIINLSSLAHVAGHIDFDDLNWQTRKYNTKAAYCQSKLAIVLFT
KELSRRLQGSGVTVNALHPGVARTELGRHTGIHGSTFSSTTLGPIFWLLVKSPELAAQPSTYLAVAEELA
DVSGKYFDGLKQKAPAPEAEDEEVARRLWAESARLVGLEAPSVREQPLPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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