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Report for CCDS1886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1886.1 Public Homo sapiens 2 CNRIP1 24 110 108 CCDS HistoryNCBI Gene:25927Re-query CCDS DB by CCDS ID:1886.1Re-query CCDS DB by GeneID:25927See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263655.4 ENSP00000263655.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263655.4Link to Ensembl Protein Viewer:ENSP00000263655.3Re-query CCDS DB by Nucleotide ID:ENST00000263655Re-query CCDS DB by Protein ID:ENSP00000263655
Original member Current member NCBI NM_001371604.1 NP_001358533.1 Accepted alive Link to Nucleotide Sequence:NM_001371604.1Link to Protein Sequence:NP_001358533.1Re-query CCDS DB by Nucleotide ID:NM_001371604Re-query CCDS DB by Protein ID:NP_001358533Link to BLAST:NP_001358533.1
Original member Current member NCBI NM_001371605.1 NP_001358534.1 Accepted alive Link to Nucleotide Sequence:NM_001371605.1Link to Protein Sequence:NP_001358534.1Re-query CCDS DB by Nucleotide ID:NM_001371605Re-query CCDS DB by Protein ID:NP_001358534Link to BLAST:NP_001358534.1
Original member Current member NCBI NM_001371606.1 NP_001358535.1 Accepted alive Link to Nucleotide Sequence:NM_001371606.1Link to Protein Sequence:NP_001358535.1Re-query CCDS DB by Nucleotide ID:NM_001371606Re-query CCDS DB by Protein ID:NP_001358535Link to BLAST:NP_001358535.1
Original member Current member NCBI NM_015463.3 NP_056278.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015463.3Link to Protein Sequence:NP_056278.1Re-query CCDS DB by Nucleotide ID:NM_015463Re-query CCDS DB by Protein ID:NP_056278Link to BLAST:NP_056278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358533.1 164 Q96F85-1 164 100% 0 0
NP_001358534.1 164 Q96F85-1 164 100% 0 0
NP_001358535.1 164 Q96F85-1 164 100% 0 0
NP_056278.1 164 Q96F85-1 164 100% 0 0

Chromosomal Locations for CCDS 1886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 68293862 68294026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68317157 68317307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68319222 68319400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGGGGGACCTGCCGGGCCTCGTGCGCCTCTCCATCGCGCTGCGCATCCAGCCTAATGACGGCCCGGTCT
TTTACAAGGTGGACGGGCAGCGCTTCGGCCAGAACCGCACCATCAAGCTGCTCACCGGCTCCTCCTACAA
GGTTGAGGTGAAGATTAAACCCAGCACGCTGCAGGTCGAGAATATTTCCATTGGTGGTGTGCTTGTCCCA
CTGGAACTGAAGTCTAAAGAGCCTGATGGGGACAGAGTTGTTTATACGGGTACATATGACACAGAAGGTG
TGACCCCAACGAAGAGTGGAGAACGGCAACCCATCCAGATCACCATGCCGTTCACAGACATTGGGACCTT
CGAGACAGTGTGGCAAGTCAAGTTCTACAATTACCACAAGCGGGATCACTGCCAGTGGGGAAGCCCCTTC
TCTGTCATTGAGTATGAATGCAAGCCCAACGAGACACGCAGTCTGATGTGGGTGAACAAGGAGTCCTTCC
TCTGA

Translation (164 aa):
MGDLPGLVRLSIALRIQPNDGPVFYKVDGQRFGQNRTIKLLTGSSYKVEVKIKPSTLQVENISIGGVLVP
LELKSKEPDGDRVVYTGTYDTEGVTPTKSGERQPIQITMPFTDIGTFETVWQVKFYNYHKRDHCQWGSPF
SVIEYECKPNETRSLMWVNKESFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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