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Report for CCDS13395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13395.1 Public Homo sapiens 20 CDH22 24 110 108 CCDS HistoryNCBI Gene:64405Re-query CCDS DB by CCDS ID:13395.1Re-query CCDS DB by GeneID:64405See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13395.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537909.4 ENSP00000437790.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000537909.4Link to Ensembl Protein Viewer:ENSP00000437790.1Re-query CCDS DB by Nucleotide ID:ENST00000537909Re-query CCDS DB by Protein ID:ENSP00000437790
Original member Current member NCBI NM_021248.3 NP_067071.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021248.3Link to Protein Sequence:NP_067071.1Re-query CCDS DB by Nucleotide ID:NM_021248Re-query CCDS DB by Protein ID:NP_067071Link to BLAST:NP_067071.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067071.1 828 Q9UJ99 828 100% 0 0

Chromosomal Locations for CCDS 13395.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 46174506 46175077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46177946 46178197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46186588 46186705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46186826 46186947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46199423 46199559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46210307 46210560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46212995 46213188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46216826 46216993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46227508 46227627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46240963 46241257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 46251040 46251294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2487 nt):
ATGAGGCCGAGGCCCGAAGGTAGGGGGCTCCGGGCGGGAGTCGCGCTGTCCCCCGCGCTACTGCTGCTGC
TG
CTGCTGCCGCCGCCGCCGACGCTGCTGGGGCGCCTGTGGGCAGCGGGCACACCCTCGCCGTCGGCGCC
C
GGAGCTCGGCAGGACGGCGCGCTGGGAGCCGGCCGCGTCAAACGCGGCTGGGTGTGGAACCAGTTCTTC
GTG
GTAGAGGAGTACACGGGCACGGAGCCCCTGTATGTGGGCAAGATCCACTCCGACTCAGACGAGGGTG
AC
GGGGCCATCAAGTACACCATCTCAGGCGAGGGTGCTGGGACCATCTTCCTGATCGACGAGCTGACAGG
C
GACATTCATGCCATGGAGCGCCTGGACCGCGAGCAGAAAACCTTCTACACGCTGCGGGCCCAGGCTCGG
GAT
CGCGCCACCAACCGCCTACTGGAGCCCGAGTCGGAGTTCATCATCAAGGTGCAGGACATCAATGACA
GT
GAGCCCCGCTTCCTGCACGGCCCCTATATTGGCAGCGTGGCCGAGCTCTCACCTACAGGCACGTCGGT
G
ATGCAGGTGATGGCCTCGGATGCGGATGACCCCACGTACGGCAGCAGCGCTCGGCTGGTGTACAGCGTG
CTG
GACGGCGAGCACCACTTCACCGTGGACCCCAAGACCGGCGTAATCCGGACGGCTGTGCCTGACCTTG
AC
CGCGAGAGCCAGGAGCGCTACGAGGTGGTGATCCAGGCCACAGACATGGCGGGTCAGCTGGGTGGCCT
C
TCGGGCTCCACTACCGTCACCATCGTAGTCACCGACGTCAATGACAACCCGCCCCGTTTCCCGCAGAAG
ATG
TACCAGTTCAGCATCCAGGAGTCAGCCCCCATTGGAACGGCTGTGGGACGTGTGAAGGCTGAGGACT
CA
GACGTGGGAGAGAACACAGACATGACTTACCACCTTAAGGACGAGAGCAGCAGCGGCGGCGATGTGTT
C
AAGGTCACCACAGACAGCGACACTCAGGAGGCCATCATCGTAGTGCAGAAGCGCCTGGACTTCGAATCC
CAG
CCCGTGCACACCGTGATCCTGGAGGCCCTCAACAAGTTCGTGGACCCCCGCTTCGCCGACCTGGGCA
CG
TTCCGCGACCAGGCGATCGTGCGCGTGGCCGTGACCGACGTGGACGAGCCCCCCGAGTTCCGGCCGCC
C
TCCGGCCTCCTGGAGGTGCAGGAGGACGCGCAGGTGGGCTCCCTGGTCGGCGTGGTGACGGCGCGGGAC
CCC
GACGCCGCCAACCGGCCCGTCCGGTACGCCATTGACCGCGAATCAGATTTGGACCAGATCTTCGATA
TC
GATGCGGACACAGGCGCCATCGTGACTGGCAAGGGGCTGGACCGCGAGACGGCCGGCTGGCACAACAT
C
ACAGTGCTGGCCATGGAGGCGGACAATCATGCACAGCTATCCCGGGCATCCCTAAGGATCCGAATCCTG
GAT
GTGAACGACAATCCCCCAGAACTGGCCACACCCTACGAGGCAGCTGTATGCGAGGATGCCAAGCCAG
GC
CAGCTCATCCAGACCATCAGCGTGGTGGACAGAGACGAGCCCCAAGGCGGGCACCGCTTCTATTTCCG
C
CTGGTGCCTGAAGCTCCCAGCAACCCTCATTTCTCTCTGCTTGACATCCAAGACAACACCGCTGCAGTG
CAC
ACGCAGCACGTGGGCTTCAACCGGCAGGAGCAGGACGTGTTCTTCCTGCCCATCCTGGTGGTAGACA
GT
GGGCCGCCCACACTGAGCAGCACAGGCACGCTCACCATCCGCATCTGTGGCTGCGACAGCTCCGGCAC
C
ATCCAGTCCTGCAACACCACGGCCTTTGTCATGGCCGCCTCCCTCAGCCCCGGCGCCCTCATCGCCCTC
TTG
GTCTGCGTTCTCATCCTGGTTGTGCTGGTGCTGCTGATCCTCACCCTCAGGCGCCACCACAAGAGCC
AC
CTGAGCTCGGACGAGGATGAAGACATGCGGGACAACGTCATCAAATACAACGACGAAGGCGGCGGCGA
G
CAGGACACCGAAGCCTACGACATGTCGGCGCTGCGGAGCCTCTACGACTTCGGCGAGCTCAAGGGCGGC
GAC
GGGGGCGGCAGCGCGGGCGGGGGAGCGGGCGGGGGCTCGGGCGGGGGCGCGGGCAGCCCCCCGCAGG
CC
CACCTGCCCTCCGAGCGCCACTCGCTGCCGCAGGGGCCGCCGAGCCCCGAGCCAGACTTCTCAGTGTT
C
AGGGACTTCATCAGCCGCAAGGTGGCACTGGCGGACGGGGACCTGTCGGTGCCGCCCTACGACGCCTTC
CAG
ACCTACGCCTTCGAGGGCGCGGACTCGCCGGCCGCCTCGCTCAGCTCCCTGCACAGCGGCTCGTCGG
GC
TCCGAGCAGGACTTCGCCTATCTCAGCAGCTGGGGTCCGCGCTTCCGGCCCCTGGCCGCGCTCTACGC
C
GGCCACCGCGGGGACGACGAGGCCCAGGCCTCCTAG


Translation (828 aa):
MRPRPEGRGLRAGVALSPALLLLLLLPPPPTLLGRLWAAGTPSPSAPGARQDGALGAGRVKRGWVWNQFF
V
VEEYTGTEPLYVGK
IHSDSDEGDGAIKYTISGEGAGTIFLIDELTGDIHAMERLDREQKTFYTLRAQAR
D
RATNRLLEPESEFIIKVQDINDSEPRFLHGPYIGSVAELSPT
GTSVMQVMASDADDPTYGSSARLVYSV
L
DGEHHFTVDPKT
GVIRTAVPDLDRESQERYEVVIQATDMAGQLGGLSGSTTVTIVVTDVNDNPPRFPQK
M
YQFSIQESAPIGTAVGRVKAEDSDVGENTDMTYHLKDESSSGGDVFKVTTDSDTQEAIIVVQK
RLDFES
Q
PVHTVILEALNKFVDPRFADLGTFRDQAIVRVAVTDVDEPPEFRPPSGLLEVQEDAQVGSLVGVVTARD
P
DAANRPV
RYAIDRESDLDQIFDIDADTGAIVTGKGLDRETAGWHNITVLAMEADNHAQLSRASLRIRIL
D
VNDNPPELATPYEAAVCEDAKPGQ
LIQTISVVDRDEPQGGHRFYFRLVPEAPSNPHFSLLDIQDNTAAV
H
TQHVGFNRQEQDVFFLPILVVDSGPPTLSSTGTLTIRICGCDSSGTIQSCNTTAFVMAASLSPGALIAL
L
VCVLILV
VLVLLILTLRRHHKSHLSSDEDEDMRDNVIKYNDEGGGEQDTEAYDMSALRSLYDFGELKGG
D
GGGSAGGGAGGGSGGGAGSPPQAHLPSERHSLPQGPPSPEPDFSVFRDFISRKVALADGDLSVPPYDAF
Q
TYAFEGADSPAASLSSLHSGSSGSEQDFAYLSSWGPRFRPLAALYAGHRGDDEAQAS




Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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