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Report for CCDS13877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13877.1 Public Homo sapiens 22 SEC14L3 24 110 108 CCDS HistoryNCBI Gene:266629Re-query CCDS DB by CCDS ID:13877.1Re-query CCDS DB by GeneID:266629See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13877.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000215812.9 ENSP00000215812.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000215812.9Link to Ensembl Protein Viewer:ENSP00000215812.5Re-query CCDS DB by Nucleotide ID:ENST00000215812Re-query CCDS DB by Protein ID:ENSP00000215812
Original member Current member NCBI NM_174975.5 NP_777635.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174975.5Link to Protein Sequence:NP_777635.1Re-query CCDS DB by Nucleotide ID:NM_174975Re-query CCDS DB by Protein ID:NP_777635Link to BLAST:NP_777635.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777635.1 400 Q9UDX4-1 400 100% 0 0

Chromosomal Locations for CCDS 13877.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 30460021 30460142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30461310 30461479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30461555 30461694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30462086 30462192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30464820 30464903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30466334 30466394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30466982 30467077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30468508 30468696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30470019 30470078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30470212 30470255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30470507 30470582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 30471905 30471958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGAGCGGCCGAGTTGGAGACCTGAGCCCCAAACAGGCAGAGACCCTGGCCAAGTTCCGAGAAAACGTCC
AGGATGTGCTTCCTGCCCTGCCCAACCCTGATGATTATTTCCTTCTACGCTGGCTCCGAGCTCGGAATTT
TGACTTGCAGAAGTCGGAGGCTTTGCTCCGCAAGTACATGGAGTTCCGGAAGACCATGGATATTGACCAT
ATCCTTGATTGGCAGCCCCCAGAGGTGATCCAGAAGTACATGCCTGGGGGCCTGTGTGGCTATGACCGTG
ATGGCTGCCCCGTGTGGTATGACATCATTGGGCCACTTGATCCCAAGGGGTTGCTCTTCTCAGTCACCAA
GCAGGACCTGCTCAAGACCAAGATGAGGGACTGTGAGCGCATCCTGCATGAGTGTGACCTGCAGACAGAG
AGGCTAGGGAAGAAGATTGAGACCATCGTGATGATATTTGACTGTGAGGGCCTGGGACTGAAACACTTCT
GGAAACCTCTGGTAGAAGTGTACCAGGAGTTCTTTGGCCTCCTTGAAGAGAATTACCCAGAGACCCTGAA
GTTCATGCTCATCGTGAAAGCTACCAAACTGTTCCCTGTGGGCTACAACCTCATGAAGCCATTCCTGAGT
GAGGACACTCGCAGGAAAATTATTGTGTTGGGAAATAACTGGAAGGAAGGTTTGCTGAAACTCATCAGTC
CTGAGGAACTGCCTGCCCAGTTTGGGGGCACCCTGACTGACCCAGATGGGAACCCCAAATGTTTAACCAA
GATTAACTATGGCGGGGAGATCCCCAAGTCCATGTACGTGCGGGACCAGGTGAAGACTCAGTACGAGCAC
TCGGTGCAGATCAACCGCGGCTCATCACACCAAGTGGAATACGAGATCCTATTTCCAGGCTGCGTTCTCA
GGTGGCAGTTCTCATCTGATGGTGCGGACATCGGCTTCGGAGTTTTCCTGAAGACCAAGATGGGGGAGCG
ACAGCGGGCAGGGGAGATGACAGATGTTCTACCCAGCCAGCGCTATAACGCCCACATGGTGCCCGAGGAT
GGGAACCTCACCTGCTCAGAGGCCGGCGTCTATGTCCTACGCTTCGACAACACCTATAGCTTTGTCCACG
CCAAGAAGGTCAGCTTCACAGTGGAGGTCCTGCTCCCTGACGAGGGCATGCAGAAATATGATAAGGAGCT
CACCCCTGTCTAG

Translation (400 aa):
MSGRVGDLSPKQAETLAKFRENVQDVLPALPNPDDYFLLRWLRARNFDLQKSEALLRKYMEFRKTMDIDH
ILDWQPPEVIQKYMPGGLCGYDRDGCPVWYDIIGPLDPKGLLFSVTKQDLLKTKMRDCERILHECDLQTE
RLGKKIETIVMIFDCEGLGLKHFWKPLVEVYQEFFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFLS
EDTRRKIIVLGNNWKEGLLKLISPEELPAQFGGTLTDPDGNPKCLTKINYGGEIPKSMYVRDQVKTQYEH
SVQINRGSSHQVEYEILFPGCVLRWQFSSDGADIGFGVFLKTKMGERQRAGEMTDVLPSQRYNAHMVPED
GNLTCSEAGVYVLRFDNTYSFVHAKKVSFTVEVLLPDEGMQKYDKELTPV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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