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Report for CCDS2723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2723.1 Public Homo sapiens 3 TGM4 24 110 108 CCDS HistoryNCBI Gene:7047Re-query CCDS DB by CCDS ID:2723.1Re-query CCDS DB by GeneID:7047See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2723.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296125.9 ENSP00000296125.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296125.9Link to Ensembl Protein Viewer:ENSP00000296125.4Re-query CCDS DB by Nucleotide ID:ENST00000296125Re-query CCDS DB by Protein ID:ENSP00000296125
Original member Current member NCBI NM_003241.4 NP_003232.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003241.4Link to Protein Sequence:NP_003232.2Re-query CCDS DB by Nucleotide ID:NM_003241Re-query CCDS DB by Protein ID:NP_003232Link to BLAST:NP_003232.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003232.2 684 P49221 684 100% 0 0

Chromosomal Locations for CCDS 2723.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 44874679 44874697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44885325 44885498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44887689 44887795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44890603 44890732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44893577 44893695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44896709 44896816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44901524 44901698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44901793 44901931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44903884 44903987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44906949 44907200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44910090 44910368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44910958 44911127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44911270 44911406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44913584 44913725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGATGGATGCATCAAAAGAGCTGCAAGTTCTCCACATTGACTTCTTGAATCAGGACAACGCCGTTTCTC
AC
CACACATGGGAGTTCCAAACGAGCAGTCCTGTGTTCCGGCGAGGACAGGTGTTTCACCTGCGGCTGGT
G
CTGAACCAGCCCCTACAATCCTACCACCAACTGAAACTGGAATTCAGCACAGGGCCGAATCCTAGCATC
GCC
AAACACACCCTGGTGGTGCTCGACCCGAGGACGCCCTCAGACCACTACAACTGGCAGGCAACCCTTC
AA
AATGAGTCTGGCAAAGAGGTCACAGTGGCTGTCACCAGTTCCCCCAATGCCATCCTGGGCAAGTACCA
A
CTAAACGTGAAAACTGGAAACCACATCCTTAAGTCTGAAGAAAACATCCTATACCTTCTCTTCAACCCA
TGG
TGTAAAGAGGACATGGTTTTCATGCCTGATGAGGACGAGCGCAAAGAGTACATCCTCAATGACACGG
GC
TGCCATTACGTGGGGGCTGCCAGAAGTATCAAATGCAAACCCTGGAACTTTGGTCAGTTTGAGAAAAA
T
GTCCTGGACTGCTGCATTTCCCTGCTGACTGAGAGCTCCCTCAAGCCCACAGATAGGAGGGACCCCGTG
CTG
GTGTGCAGGGCCATGTGTGCTATGATGAGCTTTGAGAAAGGCCAGGGCGTGCTCATTGGGAATTGGA
CT
GGGGACTACGAAGGTGGCACAGCCCCATACAAGTGGACAGGCAGTGCCCCGATCCTGCAGCAGTACTA
C
AACACGAAGCAGGCTGTGTGCTTTGGCCAGTGCTGGGTGTTTGCTGGGATCCTGACTACAGTGCTGAGA
GCG
TTGGGCATCCCAGCACGCAGTGTGACAGGCTTCGATTCAGCTCACGACACAGAAAGGAACCTCACGG
TG
GACACCTATGTGAATGAGAATGGCGAGAAAATCACCAGTATGACCCACGACTCTGTCTGGAATTTCCA
T
GTGTGGACGGATGCCTGGATGAAGCGACCGGATCTGCCCAAGGGCTACGACGGCTGGCAGGCTGTGGAC
GCA
ACGCCGCAGGAGCGAAGCCAGGGTGTCTTCTGCTGTGGGCCATCACCACTGACCGCCATCCGCAAAG
GT
GACATCTTTATTGTCTATGACACCAGATTCGTCTTCTCAGAAGTGAATGGTGACAGGCTCATCTGGTT
G
GTGAAGATGGTGAATGGGCAGGAGGAGTTACACGTAATTTCAATGGAGACCACAAGCATCGGGAAAAAC
ATC
AGCACCAAGGCAGTGGGCCAAGACAGGCGGAGAGATATCACCTATGAGTACAAGTATCCAGAAGGCT
CC
TCTGAGGAGAGGCAGGTCATGGATCATGCCTTCCTCCTTCTCAGTTCTGAGAGGGAGCACAGACGACC
T
GTAAAAGAGAACTTTCTTCACATGTCGGTACAATCAGATGATGTGCTGCTGGGAAACTCTGTTAATTTC
ACC
GTGATTCTTAAAAGGAAGACCGCTGCCCTACAGAATGTCAACATCTTGGGCTCCTTTGAACTACAGT
TG
TACACTGGCAAGAAGATGGCAAAACTGTGTGACCTCAATAAGACCTCGCAGATCCAAGGTCAAGTATC
A
GAAGTGACTCTGACCTTGGACTCCAAGACCTACATCAACAGCCTGGCTATATTAGATGATGAGCCAGTT
ATC
AGAGGTTTCATCATTGCGGAAATTGTGGAGTCTAAGGAAATCATGGCCTCTGAAGTATTCACGTCTT
TC
CAGTACCCTGAGTTCTCTATAGAGTTGCCTAACACAGGCAGAATTGGCCAGCTACTTGTCTGCAATTG
T
ATCTTCAAGAATACCCTGGCCATCCCTTTGACTGACGTCAAGTTCTCTTTGGAAAGCCTGGGCATCTCC
TCA
CTACAGACCTCTGACCATGGGACGGTGCAGCCTGGTGAGACCATCCAATCCCAAATAAAATGCACCC
CA
ATAAAAACTGGACCCAAGAAATTTATCGTCAAGTTAAGTTCCAAACAAGTGAAAGAGATTAATGCTCA
G
AAGATTGTTCTCATCACCAAGTAG


Translation (684 aa):
MMDASKELQVLHIDFLNQDNAVSHHTWEFQTSSPVFRRGQVFHLRLVLNQPLQSYHQLKLEFSTGPNPSI
A
KHTLVVLDPRTPSDHYNWQATLQNESGKE
VTVAVTSSPNAILGKYQLNVKTGNHILKSEENILYLLFNP
W
CK
EDMVFMPDEDERKEYILNDTGCHYVGAARSIKCKPWNFGQFEKNVLDCCISLLTESSLKPTDRRDPV
L
VCRAMCAM
MSFEKGQGVLIGNWTGDYEGGTAPYKWTGSAPILQQYYNTKQAVCFGQCWVFAGILTTVLR
A
LGIPARSVTGFDSAHDTERNLTVDTYVNENGEKITSMTHDSV
WNFHVWTDAWMKRPDLPKGYDGWQAVD
A
TPQERSQ
GVFCCGPSPLTAIRKGDIFIVYDTRFVFSEVNGDRLIWLVKMVNGQEELHVISMETTSIGKN
I
STKAVGQDRRRDITYEYKYPE
GSSEERQVMDHAFLLLSSEREHRRPVKENFLHMSVQSDDVLLGNSVNF
T
VILKRKTAALQNVNILGSFELQLYTGKKMAKLCDLNKTSQIQGQ
VSEVTLTLDSKTYINSLAILDDEPV
I
RGFIIAEIVESKEIMASEVFTSFQYPEFSIE
LPNTGRIGQLLVCNCIFKNTLAIPLTDVKFSLESLGIS
S
LQTSDH
GTVQPGETIQSQIKCTPIKTGPKKFIVKLSSKQVKEINAQKIVLITK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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