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Report for CCDS33906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33906.1 Public Homo sapiens 3 ETV5 24 110 108 CCDS HistoryNCBI Gene:2119Re-query CCDS DB by CCDS ID:33906.1Re-query CCDS DB by GeneID:2119See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33906.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306376.10 ENSP00000306894.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306376.10Link to Ensembl Protein Viewer:ENSP00000306894.5Re-query CCDS DB by Nucleotide ID:ENST00000306376Re-query CCDS DB by Protein ID:ENSP00000306894
Original member Current member EBI ENST00000434744.5 ENSP00000413755.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434744.5Link to Ensembl Protein Viewer:ENSP00000413755.1Re-query CCDS DB by Nucleotide ID:ENST00000434744Re-query CCDS DB by Protein ID:ENSP00000413755
Original member Current member NCBI NM_004454.3 NP_004445.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004454.3Link to Protein Sequence:NP_004445.1Re-query CCDS DB by Nucleotide ID:NM_004454Re-query CCDS DB by Protein ID:NP_004445Link to BLAST:NP_004445.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004445.1 510 P41161-1 510 100% 0 0

Chromosomal Locations for CCDS 33906.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 186048639 186048860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186052030 186052131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186057075 186057244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186057423 186057491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186064417 186064476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186065813 186066072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186079817 186080104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186081046 186081175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186105305 186105355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186105449 186105496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186105625 186105712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186105824 186105868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGGACGGGTTTTATGATCAGCAAGTCCCTTTTATGGTCCCAGGGAAATCTCGATCTGAGGAATGCAGAG
GGCGGCCTGTGATTGACAGAAAGAGGAAGTTTTTGGACACAGATCTGGCTCACGATTCTGAAGAGCTATT
TCAGGATCTCAGTCAACTTCAAGAGGCTTGGTTAGCTGAAGCACAAGTTCCTGATGATGAACAGTTTGTC
CCAGATTTTCAGTCTGATAACCTGGTGCTTCATGCCCCACCTCCAACCAAGATCAAACGGGAGCTGCACA
GCCCCTCCTCTGAGCTGTCGTCTTGTAGCCATGAGCAGGCTCTTGGTGCTAACTATGGAGAAAAGTGCCT
CTACAACTATTGTGCCTATGATAGGAAGCCTCCCTCTGGGTTCAAGCCATTAACCCCTCCTACAACCCCC
CTCTCACCCACCCATCAGAATCCCCTATTTCCCCCACCTCAGGCAACTCTGCCCACCTCAGGGCATGCCC
CTGCAGCTGGCCCAGTTCAAGGTGTGGGCCCCGCCCCCGCCCCCCATTCGCTTCCAGAGCCTGGACCACA
GCAGCAAACATTTGCGGTCCCCCGACCACCACATCAGCCCCTGCAGATGCCAAAGATGATGCCTGAAAAC
CAGTATCCATCAGAACAGAGATTTCAGAGACAACTGTCTGAACCCTGCCACCCCTTCCCTCCTCAGCCAG
GAGTTCCTGGAGATAATCGCCCCAGTTACCATCGGCAAATGTCAGAACCTATTGTCCCTGCAGCTCCCCC
GCCCCCTCAGGGATTCAAACAAGAATACCATGACCCACTCTATGAACATGGGGTCCCGGGCATGCCAGGG
CCCCCAGCACACGGGTTCCAGTCACCAATGGGAATCAAGCAGGAGCCTCGGGATTACTGCGTCGATTCAG
AAGTGCCTAACTGCCAGTCATCCTACATGAGAGGGGGTTATTTCTCCAGCAGCCATGAAGGTTTTTCATA
TGAAAAAGATCCCCGATTATACTTTGACGACACTTGTGTTGTGCCTGAGAGACTGGAAGGCAAAGTCAAA
CAGGAGCCTACCATGTATCGAGAGGGGCCCCCTTACCAGAGGCGAGGTTCCCTTCAGCTGTGGCAGTTCC
TGGTCACCCTTCTTGATGACCCAGCCAATGCCCACTTCATTGCCTGGACAGGTCGAGGCATGGAGTTCAA
GCTGATAGAACCGGAAGAGGTTGCTCGGCGCTGGGGCATCCAGAAGAACCGGCCAGCCATGAACTATGAC
AAGCTGAGCCGCTCTCTCCGCTATTACTATGAAAAGGGCATCATGCAGAAGGTGGCTGGAGAGCGATACG
TCTACAAATTTGTCTGTGACCCAGATGCCCTCTTCTCCATGGCTTTCCCGGATAACCAGCGTCCGTTCCT
GAAGGCAGAGTCCGAGTGCCACCTCAGCGAGGAGGACACCCTGCCGCTGACCCACTTTGAAGACAGCCCC
GCTTACCTCCTGGACATGGACCGCTGCAGCAGCCTCCCCTATGCCGAAGGCTTTGCTTACTAA

Translation (510 aa):
MDGFYDQQVPFMVPGKSRSEECRGRPVIDRKRKFLDTDLAHDSEELFQDLSQLQEAWLAEAQVPDDEQFV
PDFQSDNLVLHAPPPTKIKRELHSPSSELSSCSHEQALGANYGEKCLYNYCAYDRKPPSGFKPLTPPTTP
LSPTHQNPLFPPPQATLPTSGHAPAAGPVQGVGPAPAPHSLPEPGPQQQTFAVPRPPHQPLQMPKMMPEN
QYPSEQRFQRQLSEPCHPFPPQPGVPGDNRPSYHRQMSEPIVPAAPPPPQGFKQEYHDPLYEHGVPGMPG
PPAHGFQSPMGIKQEPRDYCVDSEVPNCQSSYMRGGYFSSSHEGFSYEKDPRLYFDDTCVVPERLEGKVK
QEPTMYREGPPYQRRGSLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYD
KLSRSLRYYYEKGIMQKVAGERYVYKFVCDPDALFSMAFPDNQRPFLKAESECHLSEEDTLPLTHFEDSP
AYLLDMDRCSSLPYAEGFAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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