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Report for CCDS63998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63998.1 Public Homo sapiens 4 NUP54 24 110 108 CCDS HistoryNCBI Gene:53371Re-query CCDS DB by CCDS ID:63998.1Re-query CCDS DB by GeneID:53371See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000514987.6 ENSP00000421304.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514987.6Link to Ensembl Protein Viewer:ENSP00000421304.1Re-query CCDS DB by Nucleotide ID:ENST00000514987Re-query CCDS DB by Protein ID:ENSP00000421304
Original member Current member NCBI NM_001278603.2 NP_001265532.1 Accepted alive Link to Nucleotide Sequence:NM_001278603.2Link to Protein Sequence:NP_001265532.1Re-query CCDS DB by Nucleotide ID:NM_001278603Re-query CCDS DB by Protein ID:NP_001265532Link to BLAST:NP_001265532.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265532.1 459 Q7Z3B4-3 459 100% 0 0

Chromosomal Locations for CCDS 63998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 76115366 76115494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76117664 76117774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76118075 76118194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76124649 76124756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76130656 76130749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76131230 76131284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76132523 76132719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76134175 76134362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76136186 76136412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76144390 76144473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 76148308 76148374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGCCTTCAATTTTGGGGCTCCCTCGGGCACCTCCGGTACCGCTGCAGCCACCGCGGCCCCCGCGGGTG
GGTTTGGAGGATTTGGGACAACATCTACAACTGCAGGTTCTGCATTCAGCTTTTCTGCCCCAACTAACAC
AGGCACTACTGCATTAGGTGGTCTCTTCAGTCAGCCTACACAAGCTCCTACCCAGTCCAACCAGCTGATA
AATACTGCGAGTGCTCTTTCTGCTCCAACGCTGTTGGGAGATGAGAGAGATGCTATTTTGGCAAAATGGA
ATCAACTGCAGGCCTTTTGGGGAACAGGAAAAGGGTATTTCAACAATAATATTCCGCCAGTGGAATTCAC
ACAAGAAAATCCCTTTTGCCGATTTAAGGCAGTAGGTTATAGTTGCATGCCCAGTAATAAAGATGAAGAT
GGGCTAGTGGTTTTAGTTTTCAACAAAAAAGAAACAGAGATTCGAAGCCAACAACAACAGTTGGTAGAAT
CATTGCATAAAGTTTTGGGAGGAAACCAGACCCTTACTGTAAATGTAGAGGGCACTAAAACATTGCCAGA
TGATCAGACAGAAGTTGTTATTTATGTTGTTGAGCGTTCGCCAAATGGTACTTCAAGAAGAGTTCCAGCT
ACAACGCTATATGCCCATTTTGAACAAGCCAATATAAAAACACAATTGCAGCAACTTGGTGTAACCCTTT
CTATGACTAGAACAGAACTTTCTCCTGCACAGATCAAACAGCTTTTACAGAATCCTCCTGCTGGTGTTGA
TCCTATTATCTGGGAACAGGCCAAGGTAGATAACCCTGATTCTGAAAAGTTAATTCCTGTACCAATGGTG
GGTTTTAAGGAACTTCTCCGAAGACTGAAGGTTCAAGATCAGATGACTAAGCAGCATCAAACCAGATTAG
ATATCATATCTGAAGATATTAGTGAGCTACAAAAGAATCAAACTACATCTGTAGCCAAAATTGCACAATA
CAAGAGGAAACTCATGGATCTTTCCCATAGAACTTTACAGGTCCTAATCAAACAGGAAATTCAAAGGAAG
AGTGGTTATGCCATTCAGGCTGATGAAGAGCAGTTGCGAGTTCAGCTGGATACGATTCAGGGTGAACTAA
ATGCACCTACTCAGTTCAAGGGCCGACTAAATGAATTGATGTCTCAAATCAGGATGCAGAATCATTTTGG
AGCAGTCAGATCTGAAGAAAGGTATTACATAGATGCAGATCTGTTACGAGAAATCAAGCAGCATTTGAAA
CAACAACAGGAAGGCCTTAGCCATTTGATTAGCATCATTAAAGACGATCTAGAAGATATAAAGCTGGTCG
AACATGGATTGAATGAAACCATCCACATCAGAGGTGGTGTCTTTAGTTGA

Translation (459 aa):
MAFNFGAPSGTSGTAAATAAPAGGFGGFGTTSTTAGSAFSFSAPTNTGTTALGGLFSQPTQAPTQSNQLI
NTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVGYSCMPSNKDED
GLVVLVFNKKETEIRSQQQQLVESLHKVLGGNQTLTVNVEGTKTLPDDQTEVVIYVVERSPNGTSRRVPA
TTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLLQNPPAGVDPIIWEQAKVDNPDSEKLIPVPMV
GFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKNQTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRK
SGYAIQADEEQLRVQLDTIQGELNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYYIDADLLREIKQHLK
QQQEGLSHLISIIKDDLEDIKLVEHGLNETIHIRGGVFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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