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Report for CCDS34029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34029.1 Public Homo sapiens 4 FAM13A 24 110 108 CCDS HistoryNCBI Gene:10144Re-query CCDS DB by CCDS ID:34029.1Re-query CCDS DB by GeneID:10144See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34029.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264344.10 ENSP00000264344.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264344.10Link to Ensembl Protein Viewer:ENSP00000264344.5Re-query CCDS DB by Nucleotide ID:ENST00000264344Re-query CCDS DB by Protein ID:ENSP00000264344
Original member Current member NCBI NM_014883.4 NP_055698.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014883.4Link to Protein Sequence:NP_055698.2Re-query CCDS DB by Nucleotide ID:NM_014883Re-query CCDS DB by Protein ID:NP_055698Link to BLAST:NP_055698.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055698.2 1023 O94988-4 1023 100% 0 0

Chromosomal Locations for CCDS 34029.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88728533 88728659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88731327 88731428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88732002 88732198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88737472 88737555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88739030 88739125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88746932 88747015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88747631 88747851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88748952 88749033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88749771 88749909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88750424 88750637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88758754 88758901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88767553 88767595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88767983 88768059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88781165 88781351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88787753 88787932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88790586 88790627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88805011 88805052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88851020 88851183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88906379 88906462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88938088 88938241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88990973 88991150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89020460 89020669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89029460 89029649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 89056938 89056964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3072 nt):
ATGGGGGCAGGAGCTCTAGCCATCTGTCAAAGTAAAGCAGCGGTTCGGCTGAAAGAAGACATGAAAAAGA
TAGTGGCAGTGCCATTAAATGAACAGAAGGATTTTACCTATCAGAAGTTATTTGGAGTCAGTCTCCAAGA
ACTTGAACGGCAGGGGCTCACCGAGAATGGCATTCCAGCAGTAGTGTGGAATATAGTGGAATATTTGACG
CAGCATGGACTTACCCAAGAAGGTCTTTTTAGGGTGAATGGTAACGTGAAGGTGGTGGAACAACTTCGAC
TGAAGTTCGAGAGTGGAGTGCCCGTGGAGCTCGGGAAGGACGGTGATGTCTGCTCAGCAGCCAGTCTGTT
GAAGCTGTTTCTGAGGGAGCTGCCTGACAGTCTGATCACCTCAGCGTTGCAGCCTCGATTCATTCAACTC
TTTCAGGATGGCAGAAATGATGTTCAGGAGAGTAGCTTAAGAGACTTAATAAAAGAGCTGCCAGACACCC
ACTACTGCCTCCTCAAGTACCTTTGCCAGTTCTTGACAAAAGTAGCCAAGCATCATGTGCAGAATCGCAT
GAATGTTCACAATCTCGCCACTGTATTTGGGCCAAATTGCTTTCATGTGCCACCTGGGCTTGAAGGCATG
AAGGAACAGGACCTGTGCAACAAGATAATGGCTAAAATTCTAGAAAATTACAATACCCTGTTTGAAGTAG
AGTATACAGAAAATGATCATCTGAGATGTGAAAACCTGGCTAGGCTTATCATAGTAAAAGAGGTCTATTA
TAAGAACTCCCTGCCCATCCTTTTAACAAGAGGCTTAGAAAGAGACATGCCAAAACCACCTCCAAAAACC
AAGATCCCAAAATCCAGGAGTGAGGGATCTATTCAGGCCCACAGAGTACTGCAACCAGAGCTATCTGATG
GCATTCCTCAGCTCAGCTTGCGGCTAAGTTATAGAAAAGCCTGCTTGGAAGACATGAATTCAGCAGAGGG
TGCTATTAGTGCCAAGTTGGTACCCAGTTCACAGGAAGATGAAAGACCTCTGTCACCTTTCTATTTGAGT
GCTCATGTACCCCAAGTCAGCAATGTGTCTGCAACCGGAGAACTCTTAGAAAGAACCATCCGATCAGCTG
TAGAACAACATCTTTTTGATGTTAATAACTCTGGAGGTCAAAGTTCAGAGGACTCAGAATCTGGAACACT
ATCAGCATCTTCTGCCACATCTGCCAGACAGCGCCGCCGCCAGTCCAAGGAGCAGGATGAAGTTCGACAT
GGGAGAGACAAGGGACTTATCAACAAAGAAAATACTCCTTCTGGGTTCAACCACCTTGATGATTGTATTT
TGAATACTCAGGAAGTCGAAAAGGTACACAAAAATACTTTTGGTTGTGCTGGAGAAAGGAGCAAGCCTAA
ACGTCAGAAATCCAGTACTAAACTTTCTGAGCTTCATGACAATCAGGACGGTCTTGTGAATATGGAAAGT
CTCAATTCCACACGATCTCATGAGAGAACTGGACCTGATGATTTTGAATGGATGTCTGATGAAAGGAAAG
GAAATGAAAAAGATGGTGGACACACTCAGCATTTTGAGAGCCCCACAATGAAGATCCAGGAGCATCCCAG
CCTATCTGACACCAAACAGCAGAGAAATCAAGATGCCGGTGACCAGGAGGAGAGCTTTGTCTCCGAAGTG
CCCCAGTCGGACCTGACTGCATTGTGTGATGAAAAGAACTGGGAAGAGCCTATCCCTGCTTTCTCCTCCT
GGCAGCGGGAGAACAGTGACTCTGATGAAGCCCACCTCTCGCCGCAGGCTGGGCGCCTGATCCGTCAGCT
GCTGGACGAAGACAGCGACCCCATGCTCTCTCCTCGGTTCTACGCTTATGGGCAGAGCAGGCAATACCTG
GATGACACAGAAGTGCCTCCTTCCCCACCAAACTCCCATTCTTTCATGAGGCGGCGAAGCTCCTCTCTGG
GGTCCTATGATGATGAGCAAGAGGACCTGACACCTGCCCAGCTCACACGAAGGATTCAGAGCCTTAAAAA
GAAGATCCGGAAGTTTGAAGATAGATTCGAAGAAGAGAAGAAGTACAGACCTTCCCACAGTGACAAAGCA
GCCAATCCGGAGGTTCTGAAATGGACAAATGACCTTGCCAAATTCCGGAGACAACTTAAAGAATCAAAAC
TAAAGATATCTGAAGAGGACCTAACTCCCAGGATGCGGCAGCGAAGCAACACACTCCCCAAGAGTTTTGG
TTCCCAACTTGAGAAAGAAGATGAGAAGAAGCAAGAGCTGGTGGATAAAGCAATAAAGCCCAGTGTTGAA
GCCACATTGGAATCTATTCAGAGGAAGCTCCAGGAGAAGCGAGCGGAAAGCAGCCGCCCTGAGGACATTA
AGGATATGACCAAAGACCAGATTGCTAATGAGAAAGTGGCTCTGCAGAAAGCTCTGTTATATTATGAAAG
CATTCATGGACGGCCGGTAACAAAGAACGAACGGCAGGTGATGAAGCCACTATACGACAGGTACCGGCTG
GTCAAACAGATCCTCTCCCGAGCTAACACCATACCCATCATTGGTTCCCCCTCCAGCAAGCGGAGAAGCC
CTTTGCTGCAGCCAATTATCGAGGGCGAAACTGCTTCCTTCTTCAAGGAGATAAAGGAAGAAGAGGAGGG
GTCAGAAGACGATAGCAATGTGAAGCCAGACTTCATGGTCACTCTGAAAACCGATTTCAGTGCACGATGC
TTTCTGGACCAATTCGAAGATGACGCTGATGGATTTATTTCCCCAATGGATGATAAAATACCATCAAAAT
GCAGCCAGGACACAGGGCTTTCAAATCTCCATGCTGCCTCAATACCTGAACTCCTGGAACACCTCCAGGA
AATGAGAGAAGAAAAGAAAAGGATTCGAAAGAAACTTCGGGATTTTGAAGACAACTTTTTCAGACAGAAT
GGAAGAAATGTCCAGAAGGAAGACCGCACTCCTATGGCTGAAGAATACAGTGAATATAAGCACATAAAGG
CGAAACTGAGGCTCCTGGAGGTGCTCATCAGCAAGAGAGACACTGATTCCAAGTCCATGTGA

Translation (1023 aa):
MGAGALAICQSKAAVRLKEDMKKIVAVPLNEQKDFTYQKLFGVSLQELERQGLTENGIPAVVWNIVEYLT
QHGLTQEGLFRVNGNVKVVEQLRLKFESGVPVELGKDGDVCSAASLLKLFLRELPDSLITSALQPRFIQL
FQDGRNDVQESSLRDLIKELPDTHYCLLKYLCQFLTKVAKHHVQNRMNVHNLATVFGPNCFHVPPGLEGM
KEQDLCNKIMAKILENYNTLFEVEYTENDHLRCENLARLIIVKEVYYKNSLPILLTRGLERDMPKPPPKT
KIPKSRSEGSIQAHRVLQPELSDGIPQLSLRLSYRKACLEDMNSAEGAISAKLVPSSQEDERPLSPFYLS
AHVPQVSNVSATGELLERTIRSAVEQHLFDVNNSGGQSSEDSESGTLSASSATSARQRRRQSKEQDEVRH
GRDKGLINKENTPSGFNHLDDCILNTQEVEKVHKNTFGCAGERSKPKRQKSSTKLSELHDNQDGLVNMES
LNSTRSHERTGPDDFEWMSDERKGNEKDGGHTQHFESPTMKIQEHPSLSDTKQQRNQDAGDQEESFVSEV
PQSDLTALCDEKNWEEPIPAFSSWQRENSDSDEAHLSPQAGRLIRQLLDEDSDPMLSPRFYAYGQSRQYL
DDTEVPPSPPNSHSFMRRRSSSLGSYDDEQEDLTPAQLTRRIQSLKKKIRKFEDRFEEEKKYRPSHSDKA
ANPEVLKWTNDLAKFRRQLKESKLKISEEDLTPRMRQRSNTLPKSFGSQLEKEDEKKQELVDKAIKPSVE
ATLESIQRKLQEKRAESSRPEDIKDMTKDQIANEKVALQKALLYYESIHGRPVTKNERQVMKPLYDRYRL
VKQILSRANTIPIIGSPSSKRRSPLLQPIIEGETASFFKEIKEEEEGSEDDSNVKPDFMVTLKTDFSARC
FLDQFEDDADGFISPMDDKIPSKCSQDTGLSNLHAASIPELLEHLQEMREEKKRIRKKLRDFEDNFFRQN
GRNVQKEDRTPMAEEYSEYKHIKAKLRLLEVLISKRDTDSKSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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