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Report for CCDS93786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93786.1 Public Homo sapiens 5 SLC25A48 24 110 108 CCDS HistoryNCBI Gene:153328Re-query CCDS DB by CCDS ID:93786.1Re-query CCDS DB by GeneID:153328See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93786.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000433282.6 ENSP00000399834.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433282.6Link to Ensembl Protein Viewer:ENSP00000399834.3Re-query CCDS DB by Nucleotide ID:ENST00000433282Re-query CCDS DB by Protein ID:ENSP00000399834
Original member Current member EBI ENST00000681962.1 ENSP00000506858.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000681962.1Link to Ensembl Protein Viewer:ENSP00000506858.1Re-query CCDS DB by Nucleotide ID:ENST00000681962Re-query CCDS DB by Protein ID:ENSP00000506858
Original member Current member NCBI NM_001349336.2 NP_001336265.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001349336.2Link to Protein Sequence:NP_001336265.1Re-query CCDS DB by Nucleotide ID:NM_001349336Re-query CCDS DB by Protein ID:NP_001336265Link to BLAST:NP_001336265.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001336265.1 311 Q6ZT89-1 311 100% 0 0

Chromosomal Locations for CCDS 93786.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135834848 135834893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135842416 135842459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135850425 135850496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135852563 135852821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135871461 135871718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135874021 135874154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135879968 135880090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGGAAGCTTCCAGCTGGAAGACTTTGCGGCGGGCTGGATCGGAGGTGCAGCCAGTGTCATCGTTGGCC
ACCCTCTGGACACAGTCAAGACTCGCCTGCAGGCTGGCGTTGGCTACGGAAACACCCTCAGCTGCATCCG
CGTGGTGTACAGGAGGGAGAGTATGTTCGGCTTCTTCAAGGGCATGTCCTTCCCCCTCGCCAGCATTGCC
GTCTACAACTCCGTGGTGTTTGGGGTCTTCAGTAACACGCAGCGGTTCCTCAGCCAGCACCGCTGCGGGG
AGCCAGAGGCCAGTCCTCCCCGCACGCTGTCAGACCTGCTCCTGGCCAGCATGGTGGCCGGCGTGGTCTC
TGTCGGGCTGGGAGGGCCCGTGGACCTCATCAAGATCCGGTTGCAGATGCAGACACAACCGTTTCGGGAC
GCCAACCTCGGTTTGAAGTCCAGGGCAGTGGCTCCTGCGGAGCAGCCAGCATACCAGGGGCCAGTGCACT
GCATTACAACCATTGTGAGGAATGAGGGCCTGGCGGGGCTATACCGGGGGGCCAGTGCCATGCTGCTGAG
GGATGTCCCAGGCTATTGCCTCTACTTCATCCCCTACGTGTTCCTGAGTGAGTGGATCACACCTGAGGCC
TGCACAGGCCCCAGCCCCTGTGCCGTGTGGCTGGCGGGCGGCATGGCAGGAGCAATTTCTTGGGGGACAG
CGACTCCTATGGATGTCGTGAAAAGTCGACTCCAAGCTGATGGGGTTTATTTAAACAAATATAAAGGTGT
CCTGGACTGTATCTCCCAGAGTTACCAGAAGGAAGGTCTTAAAGTGTTTTTCAGAGGCATCACTGTGAAC
GCGGTGCGGGGCTTCCCCATGAGTGCGGCCATGTTCCTTGGGTACGAGCTGTCGCTGCAGGCTATCCGCG
GGGACCACGCAGTGACGAGCCCATAA

Translation (311 aa):
MGSFQLEDFAAGWIGGAASVIVGHPLDTVKTRLQAGVGYGNTLSCIRVVYRRESMFGFFKGMSFPLASIA
VYNSVVFGVFSNTQRFLSQHRCGEPEASPPRTLSDLLLASMVAGVVSVGLGGPVDLIKIRLQMQTQPFRD
ANLGLKSRAVAPAEQPAYQGPVHCITTIVRNEGLAGLYRGASAMLLRDVPGYCLYFIPYVFLSEWITPEA
CTGPSPCAVWLAGGMAGAISWGTATPMDVVKSRLQADGVYLNKYKGVLDCISQSYQKEGLKVFFRGITVN
AVRGFPMSAAMFLGYELSLQAIRGDHAVTSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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