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Report for CCDS4326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4326.1 Public Homo sapiens 5 SAP30L 24 110 108 CCDS HistoryNCBI Gene:79685Re-query CCDS DB by CCDS ID:4326.1Re-query CCDS DB by GeneID:79685See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4326.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297109.11 ENSP00000297109.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297109.11Link to Ensembl Protein Viewer:ENSP00000297109.5Re-query CCDS DB by Nucleotide ID:ENST00000297109Re-query CCDS DB by Protein ID:ENSP00000297109
Original member Current member NCBI NM_024632.6 NP_078908.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024632.6Link to Protein Sequence:NP_078908.1Re-query CCDS DB by Nucleotide ID:NM_024632Re-query CCDS DB by Protein ID:NP_078908Link to BLAST:NP_078908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078908.1 183 Q9HAJ7-1 183 100% 0 0

Chromosomal Locations for CCDS 4326.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 154446605 154446805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154451091 154451213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154453402 154453500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154455900 154456028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGAACGGCTTCAGCACGGAGGAGGACAGCCGCGAAGGGCCCCCCGCCGCCCCAGCTGCCGCCGCCCCGG
GCTACGGCCAGAGCTGCTGCCTCATCGAGGACGGCGAGCGCTGCGTCCGGCCCGCGGGCAACGCCTCCTT
CAGCAAGAGGGTCCAGAAGAGCATCTCGCAGAAGAAACTCAAGCTGGACATCGACAAGAGCGTAAGGCAC
CTATATATCTGTGATTTTCACAAAAATTTCATCCAGAGTGTCCGAAATAAAAGGAAGAGGAAGACAAGTG
ACGATGGCGGAGATTCTCCCGAGCACGACACTGACATTCCTGAGGTTGATCTGTTCCAGCTGCAGGTGAA
CACCCTACGACGTTATAAACGACACTACAAGTTGCAGACCAGACCAGGCTTCAATAAGGCCCAGTTAGCA
GAAACTGTGAGTCGACACTTCAGGAACATACCTGTGAATGAAAAAGAGACCCTTGCCTACTTCATCTACA
TGGTGAAGAGTAACAAGAGTAGACTGGACCAGAAATCGGAGGGTGGCAAGCAGCTTGAGTGA

Translation (183 aa):
MNGFSTEEDSREGPPAAPAAAAPGYGQSCCLIEDGERCVRPAGNASFSKRVQKSISQKKLKLDIDKSVRH
LYICDFHKNFIQSVRNKRKRKTSDDGGDSPEHDTDIPEVDLFQLQVNTLRRYKRHYKLQTRPGFNKAQLA
ETVSRHFRNIPVNEKETLAYFIYMVKSNKSRLDQKSEGGKQLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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