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Report for CCDS93807.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93807.1 Public Homo sapiens 5 LARP1 24 110 108 CCDS HistoryNCBI Gene:23367Re-query CCDS DB by CCDS ID:93807.1Re-query CCDS DB by GeneID:23367See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93807.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000690816.1 ENSP00000508743.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000690816.1Link to Ensembl Protein Viewer:ENSP00000508743.1Re-query CCDS DB by Nucleotide ID:ENST00000690816Re-query CCDS DB by Protein ID:ENSP00000508743
Original member Current member EBI ENST00000685946.1 ENSP00000509794.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685946.1Link to Ensembl Protein Viewer:ENSP00000509794.1Re-query CCDS DB by Nucleotide ID:ENST00000685946Re-query CCDS DB by Protein ID:ENSP00000509794
Original member Current member NCBI NM_001367713.1 NP_001354642.1 Accepted alive Link to Nucleotide Sequence:NM_001367713.1Link to Protein Sequence:NP_001354642.1Re-query CCDS DB by Nucleotide ID:NM_001367713Re-query CCDS DB by Protein ID:NP_001354642Link to BLAST:NP_001354642.1
Original member Current member NCBI NM_001367714.1 NP_001354643.1 Accepted alive Link to Nucleotide Sequence:NM_001367714.1Link to Protein Sequence:NP_001354643.1Re-query CCDS DB by Nucleotide ID:NM_001367714Re-query CCDS DB by Protein ID:NP_001354643Link to BLAST:NP_001354643.1
Original member Current member NCBI NM_001367719.1 NP_001354648.1 Accepted alive Link to Nucleotide Sequence:NM_001367719.1Link to Protein Sequence:NP_001354648.1Re-query CCDS DB by Nucleotide ID:NM_001367719Re-query CCDS DB by Protein ID:NP_001354648Link to BLAST:NP_001354648.1

Chromosomal Locations for CCDS 93807.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 154792673 154792796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154793595 154793723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154793800 154794000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154794100 154794262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154795175 154795319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154799591 154799759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154799873 154800042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154802007 154802399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154803290 154803413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154803540 154803745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154804201 154804307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154805881 154806032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154808459 154808603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154811247 154811356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154811513 154811640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154813887 154814096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2676 nt):
ATGAAGGAACAGGAGAAAGGAGAAGGGAGTGATAGTAAGGAGAGTCCAAAAACCAAATCAGATGAATCAG
GGGAGGAAAAGAATGGAGATGAGGATTGCCAGCGAGGCGGGCAGAAGAAGAAAGGAAACAAACACAAGTG
GGTTCCATTACAAATAGACATGAAGCCTGAAGTGCCCAGAGAGAAACTGGCTTCACGCCCCACTCGCCCA
CCGGAGCCTAGACACATACCTGCCAATCGCGGAGAGATCAAAGGGTCTGAGTCTGCCACCTACGTGCCCG
TGGCCCCCCCCACCCCAGCCTGGCAACCAGAGATCAAACCGGAGCCTGCCTGGCACGACCAGGATGAGAC
ATCGAGTGTGAAGAGTGATGGGGCTGGTGGGGCGCGGGCTTCCTTCCGTGGCCGTGGACGGGGGCGTGGT
CGCGGCCGGGGACGCGGCCGGGGTGGCACTCGAACCCATTTTGACTACCAGTTTGGCTACCGAAAGTTTG
ATGGTGTGGAGGGGCCTCGTACGCCCAAGTACATGAACAACATCACCTACTACTTTGACAATGTCAGCAG
CACCGAGCTTTACAGTGTGGATCAGGAACTGCTCAAAGACTACATCAAGCGCCAGATTGAATACTACTTC
AGCGTGGACAATTTAGAGCGAGACTTCTTCCTGCGAAGGAAAATGGATGCTGATGGTTTCCTACCCATCA
CCCTTATTGCTTCCTTCCACCGAGTGCAGGCCCTTACCACTGACATTTCACTCATCTTTGCGGCCCTAAA
GGACAGCAAGGTGGTGGAGATCGTTGATGAGAAAGTTCGTAGGAGGGAGGAACCAGAAAAGTGGCCTCTT
CCCCCAATAGTGGATTATTCACAGACTGATTTCTCCCAGCTTCTCAACTGCCCTGAATTTGTTCCCCGTC
AGCACTACCAAAAGGAGACAGAGTCGGCACCTGGCTCTCCTCGTGCAGTCACCCCAGTGCCAACCAAAAC
AGAGGAGGTCAGCAACCTAAAGACACTACCCAAGGGCCTGTCTGCCAGCCTGCCTGACCTGGATTCTGAG
AACTGGATTGAAGTGAAGAAGAGGCCTCGGCCATCCCCAGCACGGCCCAAGAAGTCAGAGGAGTCCAGAT
TTTCCCACCTGACCTCTCTGCCTCAGCAGCTGCCTTCCCAGCAGCTGATGTCCAAGGATCAGGATGAGCA
AGAGGAACTGGATTTTCTGTTTGACGAGGAGATGGAGCAGATGGATGGGCGGAAGAACACCTTCACTGCC
TGGTCTGATGAGGAATCTGACTATGAGATTGATGACAGGGATGTCAACAAGATCCTCATTGTCACCCAGA
CACCACATTACATGCGCCGGCACCCAGGGGGGGACCGCACAGGCAACCACACCTCGCGTGCCAAGATGAG
CGCCGAACTGGCCAAGGTCATTAATGATGGCCTCTTCTACTATGAGCAGGACCTGTGGGCTGAAAAGTTT
GAACCTGAGTATTCCCAGATCAAGCAAGAAGTCGAGAACTTCAAAAAGGTCAATATGATCAGCCGGGAGC
AGTTTGACACACTGACCCCTGAGCCCCCTGTGGATCCCAACCAGGAAGTTCCTCCTGGGCCACCTCGGTT
CCAGCAAGTTCCTACGGATGCCCTGGCCAACAAGTTGTTTGGTGCTCCTGAGCCCTCCACCATCGCCCGC
TCTCTACCAACCACTGTCCCAGAGTCACCAAACTACCGCAACACCAGGACCCCTCGCACTCCCCGGACAC
CACAGCTCAAAGACTCAAGCCAGACATCACGGTTTTACCCAGTGGTGAAAGAAGGACGGACACTGGATGC
CAAGATGCCTCGAAAAAGAAAGACAAGACACAGTTCAAACCCACCCTTGGAGAGCCATGTGGGCTGGGTG
ATGGATTCCCGTGAGCACAGGCCCCGTACTGCTTCCATCAGCTCCAGCCCCTCAGAAGGGACGCCTACAG
TTGGCAGCTATGGCTGTACCCCTCAGTCATTGCCCAAGTTCCAGCATCCTTCCCATGAACTGCTCAAGGA
AAATGGCTTCACACAACACGTCTACCATAAGTATCGTAGGCGCTGCCTTAATGAGCGGAAACGCTTGGGC
ATTGGCCAGTCTCAGGAGATGAACACACTCTTCCGCTTCTGGTCCTTCTTCCTCCGAGATCACTTCAACA
AAAAGATGTATGAGGAGTTCAAGCAGCTGGCTCTGGAGGACGCCAAAGAAGGCTACAGATATGGTTTGGA
GTGCCTTTTTCGATACTACAGTTATGGCCTGGAAAAGAAGTTCCGGCTGGACATATTCAAGGATTTTCAG
GAGGAAACGGTGAAGGACTATGAAGCTGGCCAACTGTATGGGCTGGAGAAGTTCTGGGCCTTCTTGAAAT
ATTCCAAAGCCAAAAATTTGGACATTGACCCCAAACTGCAAGAATACCTCGGCAAATTCCGACGTCTTGA
AGACTTCCGAGTAGATCCCCCCATGGGTGAGGAGGGCAACCACAAGCGACACTCAGTGGTAGCAGGAGGT
GGCGGCGGTGAGGGCAGGAAGCGGTGCCCCTCCCAGTCTTCCAGCAGGCCTGCTGCCATGATCAGCCAAC
CCCCTACACCACCCACCGGCCAGCCTGTCCGGGAAGATGCCAAATGGACAAGCCAGCACTCGAACACACA
GACTTTGGGAAAGTGA

Translation (891 aa):
MKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEVPREKLASRPTRP
PEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRG
RGRGRGRGGTRTHFDYQFGYRKFDGVEGPRTPKYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYF
SVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPL
PPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSE
NWIEVKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTA
WSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWAEKF
EPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIAR
SLPTTVPESPNYRNTRTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWV
MDSREHRPRTASISSSPSEGTPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLG
IGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQ
EETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHKRHSVVAGG
GGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVREDAKWTSQHSNTQTLGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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