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Report for CCDS4524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4524.1 Public Homo sapiens 6 GFOD1 24 110 108 CCDS HistoryNCBI Gene:54438Re-query CCDS DB by CCDS ID:4524.1Re-query CCDS DB by GeneID:54438See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4524.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379287.4 ENSP00000368589.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379287.4Link to Ensembl Protein Viewer:ENSP00000368589.3Re-query CCDS DB by Nucleotide ID:ENST00000379287Re-query CCDS DB by Protein ID:ENSP00000368589
Original member Current member NCBI NM_018988.4 NP_061861.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018988.4Link to Protein Sequence:NP_061861.1Re-query CCDS DB by Nucleotide ID:NM_018988Re-query CCDS DB by Protein ID:NP_061861Link to BLAST:NP_061861.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061861.1 390 Q9NXC2-1 390 100% 0 0

Chromosomal Locations for CCDS 4524.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 13364743 13365662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 13486638 13486890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGCTTCCCGGGGTGGGCGTGTTCGGCACCAGCCTCACGGCCCGTGTCATCATCCCGCTGCTGAAAGACG
AGGGCTTCGCGGTGAAGGCGCTGTGGGGCCGCACGCAGGAAGAAGCGGAGGAGCTGGCCAAGGAGATGAG
TGTCCCCTTCTACACTAGCCGCATTGATGAGGTGCTGCTGCATCAGGACGTGGACTTGGTGTGCATTAAC
CTGCCGCCGCCCCTCACCAGACAGATCGCTGTCAAAACCCTAGGCATCGGCAAGAACGTCATCTGCGACC
GCACGGCCACGCCGCTGGACGCTTTCCGCATGACCTCGGCCGCCCACTACTACCCCAAGCTCATGAGCAT
CATGGGCAACGTGCTGCGCTTCCTGCCGGCTTTCGTGCGCATGAAGCAGCTGATCGAGGAGGGCTACGTG
GGCGAGCCGCTGGTGTGTGAGGTGCAGGTGCACGGCGGCAGCCTGCTGGGCAAGAAGTACAACTGGAGCT
GCGACGACTTGATGGGCGGCGGCGGCCTGCACTCCGTGGGCACCTACATCATCGACCTGCTCACCTTCCT
CACCGGCCAAAAGGCCGTCAAGGTCCACGGGCTGCTCAAGACCTTCGTGAAGCAGACTGACCACATCAAG
GGCATCCGACAGATCACCAGCGATGACTTCTGCACCTTCCAGATGGTGCTGGAGGGCGGGGTGTGCTGCA
CCGTCACCCTCAACTTCAACGTGCCCGGCGAGTTCAAGCAGGATGTCACTGTGGTGGGCTCAGCCGGGCG
CCTGCTGGCCGTGGGCACCGACCTGTACGGGCAGCGCAACAGCGCCCCGGAGCAGGAGCTGCTGGTGCAG
GACGCCACGCCGGTGAGCAACTCCCTGCTTCCGGAGAAGGCCTTCAGCGACATCCCCTCGCCCTACCTGC
GCGGCACCATCAAGATGATGCAGGCGGTGCGCCAGGCCTTCCAGGACCAGGACGACCGGCGCACGTGGGA
TGGGCGGCCCCTCACCATGGCCGCCACCTTCGACGACTGCCTGTATGCCTTGTGCGTGGTGGACACCATC
AAGAGGTCCAGCCAGACGGGCGAGTGGCAGAACATTGCCATCATGACCGAGGAGCCGGAGCTGAGCCCCG
CCTACCTGATCAGCGAGGCCATGCGCCGCAGCAGGATGTCCCTCTACTGTTAG

Translation (390 aa):
MLPGVGVFGTSLTARVIIPLLKDEGFAVKALWGRTQEEAEELAKEMSVPFYTSRIDEVLLHQDVDLVCIN
LPPPLTRQIAVKTLGIGKNVICDRTATPLDAFRMTSAAHYYPKLMSIMGNVLRFLPAFVRMKQLIEEGYV
GEPLVCEVQVHGGSLLGKKYNWSCDDLMGGGGLHSVGTYIIDLLTFLTGQKAVKVHGLLKTFVKQTDHIK
GIRQITSDDFCTFQMVLEGGVCCTVTLNFNVPGEFKQDVTVVGSAGRLLAVGTDLYGQRNSAPEQELLVQ
DATPVSNSLLPEKAFSDIPSPYLRGTIKMMQAVRQAFQDQDDRRTWDGRPLTMAATFDDCLYALCVVDTI
KRSSQTGEWQNIAIMTEEPELSPAYLISEAMRRSRMSLYC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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