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Report for CCDS93919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93919.1 Public Homo sapiens 6 TAF8 24 110 108 CCDS HistoryNCBI Gene:129685Re-query CCDS DB by CCDS ID:93919.1Re-query CCDS DB by GeneID:129685See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93919.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000456846.6 ENSP00000411900.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000456846.6Link to Ensembl Protein Viewer:ENSP00000411900.2Re-query CCDS DB by Nucleotide ID:ENST00000456846Re-query CCDS DB by Protein ID:ENSP00000411900
Current member NCBI NM_001410907.1 NP_001397836.1 Accepted alive Link to Nucleotide Sequence:NM_001410907.1Link to Protein Sequence:NP_001397836.1Re-query CCDS DB by Nucleotide ID:NM_001410907Re-query CCDS DB by Protein ID:NP_001397836Link to BLAST:NP_001397836.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001397836.1 311 Q7Z7C8-2 311 100% 0 0

Chromosomal Locations for CCDS 93919.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42050542 42050586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42051357 42051513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42055531 42055629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42055952 42056014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42057389 42057513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42066312 42066459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42068465 42068607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42077100 42077239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42086719 42086734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGCCGACGCGGCGGCCACAGCTGGGGCCGGTGGCTCCGGAACGAGATCGGGAAGTAAACAGTCCACTA
ACCCTGCCGATAACTATCATCTGGCCCGGAGGAGAACCCTGCAGGTGGTTGTGAGCTCCTTGCTGACAGA
GGCAGGGTTTGAGAGTGCCGAGAAAGCATCCGTGGAAACGCTGACAGAGATGCTGCAGAGCTACATTTCA
GAAATTGGGAGAAGTGCCAAGTCTTACTGTGAGCACACAGCCAGGACCCAGCCCACACTGTCCGATATCG
TGGTCACACTTGTTGAGATGGGTTTCAATGTGGACACTCTCCCTGCTTATGCAAAACGGTCTCAGAGGAT
GGTCATCACTGCTCCTCCGGTGACCAATCAGCCAGTGACCCCCAAGGCCCTCACTGCAGGGCAGAACCGA
CCCCACCCGCCGCACATCCCCAGCCATTTTCCTGAGTTCCCTGATCCCCACACCTACATCAAAACTCCGA
CGTACCGTGAGCCCGTGTCAGACTACCAGGTCCTGCGGGAGAAGGCTGCATCCCAGAGGCGCGATGTGGA
GCGGGCACTTACCCGTTTCATGGCCAAGACAGGCGAGACTCAGAGTCTTTTCAAAGATGACGTCAGCACA
TTTCCATTGATTGCTGCCAGACCTTTCACCATCCCCTACCTGACAGCTCTTCTTCCGTCTGAACTGGAGA
TGCAACAAATGGAAGAGACAGATTCCTCGGAGCAGGATGAACAGACAGACACAGAGAACCTTGCTCTTCA
TATCAGCATGGAGGATTCTGGAGCCGAGAAGGAGAACACCTCTGTCCTGCAGCAGAACCCCTCCTTGTCG
GGTAGCCGGAATGGGGAGGAGAACATCATCGATAACCCTTATCTGCGGCCGGTGAAGAAGCCCAAGATCC
GCAGGAAGAAGCCAGATACATTCTAG

Translation (311 aa):
MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYIS
EIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVTPKALTAGQNR
PHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVST
FPLIAARPFTIPYLTALLPSELEMQQMEETDSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLS
GSRNGEENIIDNPYLRPVKKPKIRRKKPDTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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