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Report for CCDS56549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56549.1 Public Homo sapiens 8 OXR1 24 110 108 CCDS HistoryNCBI Gene:55074Re-query CCDS DB by CCDS ID:56549.1Re-query CCDS DB by GeneID:55074See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56549.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297447.10 ENSP00000297447.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297447.10Link to Ensembl Protein Viewer:ENSP00000297447.6Re-query CCDS DB by Nucleotide ID:ENST00000297447Re-query CCDS DB by Protein ID:ENSP00000297447
Original member Current member NCBI NM_001198534.1 NP_001185463.1 Accepted alive Link to Nucleotide Sequence:NM_001198534.1Link to Protein Sequence:NP_001185463.1Re-query CCDS DB by Nucleotide ID:NM_001198534Re-query CCDS DB by Protein ID:NP_001185463Link to BLAST:NP_001185463.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185463.1 243 Q8N573-4 243 100% 0 0

Chromosomal Locations for CCDS 56549.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106726244 106726309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106737520 106737600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106739458 106739583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106740343 106740495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106742222 106742317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106745789 106745862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106750806 106750941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGTCTCGTCTCTGGTATGGGAAAAAAGGGAGAAGACATCAACCAATTAATCATAAATACACTCTGGTAG
TGTCAGTGGCTGAGTATCACCGCAGGATCGATGCTCTAAATACTGAAGAACTGCGCACACTCTGCAGACG
CCTCCAGATTACTACAAGGGAAGACATAAATTCAAAGCAGGTTGCTACAGTGAAAGCAGACCTGGAGTCT
GAATCTTTTCGACCAAACCTAAGTGATCCCAGTGAACTTTTACTGCCAGATCAAATTGAAAAGCTTACCA
AGCATCTTCCACCAAGAACAATTGGCTATCCATGGACTCTTGTTTATGGTACTGGAAAACATGGCACAAG
CTTGAAAACTCTTTATCGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGATTAAAGACAGTGAT
GGACAGGTTTTTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCTTTTATGGTACTGGAGAGA
CCTTTGTTTTTACATTCTGTCCGGAGTTTGAGGTCTTTAAGTGGACAGGAGATAATATGTTTTTTATCAA
AGGAGACATGGATTCACTAGCTTTCGGTGGTGGAGGAGGAGAATTTGCGCTTTGGCTTGATGGAGATCTC
TACCATGGAAGAAGCCATTCTTGTAAAACGTTTGGGAATCGTACACTTTCTAAGAAGGAAGATTTCTTTA
TCCAAGATATTGAAATCTGGGCTTTTGAATAA

Translation (243 aa):
MSRLWYGKKGRRHQPINHKYTLVVSVAEYHRRIDALNTEELRTLCRRLQITTREDINSKQVATVKADLES
ESFRPNLSDPSELLLPDQIEKLTKHLPPRTIGYPWTLVYGTGKHGTSLKTLYRTMTGLDTPVLMVIKDSD
GQVFGALASEPLKVSDGFYGTGETFVFTFCPEFEVFKWTGDNMFFIKGDMDSLAFGGGGGEFALWLDGDL
YHGRSHSCKTFGNRTLSKKEDFFIQDIEIWAFE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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