NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6478.1 Public Homo sapiens 9 SNAPC3 24 110 108 CCDS HistoryNCBI Gene:6619Re-query CCDS DB by CCDS ID:6478.1Re-query CCDS DB by GeneID:6619See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6478.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380821.8 ENSP00000370200.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380821.8Link to Ensembl Protein Viewer:ENSP00000370200.3Re-query CCDS DB by Nucleotide ID:ENST00000380821Re-query CCDS DB by Protein ID:ENSP00000370200
Original member Current member EBI ENST00000490969.5 ENSP00000432393.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000490969.5Link to Ensembl Protein Viewer:ENSP00000432393.1Re-query CCDS DB by Nucleotide ID:ENST00000490969Re-query CCDS DB by Protein ID:ENSP00000432393
Original member Current member EBI ENST00000467062.5 ENSP00000436699.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000467062.5Link to Ensembl Protein Viewer:ENSP00000436699.1Re-query CCDS DB by Nucleotide ID:ENST00000467062Re-query CCDS DB by Protein ID:ENSP00000436699
Original member Current member EBI ENST00000610884.4 ENSP00000483273.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610884.4Link to Ensembl Protein Viewer:ENSP00000483273.1Re-query CCDS DB by Nucleotide ID:ENST00000610884Re-query CCDS DB by Protein ID:ENSP00000483273
Original member Current member NCBI NM_001039697.2 NP_001034786.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039697.2Link to Protein Sequence:NP_001034786.1Re-query CCDS DB by Nucleotide ID:NM_001039697Re-query CCDS DB by Protein ID:NP_001034786Link to BLAST:NP_001034786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034786.1 411 Q92966 411 100% 0 0

Chromosomal Locations for CCDS 6478.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 15422880 15423193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15423909 15423986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15433552 15433636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15444602 15444706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15447095 15447244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15451320 15451402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15453041 15453205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15457960 15458067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15459719 15459866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGGCTGAAGGAAGCCGAGGTGGCCCTACGTGTAGCGGGGTGGGTGGCAGGCAGGACCCAGTCTCCGGCA
GTGGCGGCTGCAACTTTCCAGAGTATGAGCTTCCCGAGCTAAATACGCGCGCTTTCCATGTGGGCGCCTT
TGGGGAGCTGTGGCGGGGCCGTCTGCGCGGGGCCGGGGACTTGTCGCTGAGGGAGCCGCCGGCATCCGCT
CTGCCTGGGAGCCAGGCAGCTGACTCCGACCGGGAGGATGCCGCGGTGGCCAGGGATCTGGACTGCAGCC
TGGAGGCGGCGGCTGAGCTGAGGGCGGTGTGCGGCCTTGATAAACTGAAATGCCTTGAGGACGGTGAGGA
TCCAGAAGTCATTCCGGAGAATACTGACCTGGTGACTTTGGGGGTTAGAAAAAGGTTCTTGGAACATCGG
GAAGAAACCATTACAATAGATCGAGCCTGCAGACAAGAAACATTCGTTTATGAGATGGAGTCACATGCCA
TAGGAAAAAAGCCTGAAAATTCAGCAGACATGATTGAAGAAGGGGAGCTTATCCTATCTGTGAATATCTT
GTACCCTGTTATATTTCATAAGCACAAAGAACACAAACCATACCAAACAATGCTGGTGTTGGGCAGTCAA
AAACTCACACAACTGAGGGATTCAATTCGATGTGTCAGTGACCTCCAGATTGGTGGTGAATTCAGCAACA
CTCCTGACCAAGCCCCTGAGCACATCAGCAAAGACCTATACAAATCAGCCTTCTTTTATTTTGAAGGAAC
ATTTTATAATGATAAAAGATACCCAGAATGCAGAGATTTGAGCAGAACTATCATTGAGTGGTCAGAGTCC
CATGATAGAGGCTATGGAAAGTTTCAGACTGCTAGAATGGAAGATTTCACCTTCAATGACTTGTGTATTA
AACTGGGTTTTCCTTACTTATACTGTCATCAGGGAGACTGTGAACATGTCATTGTCATTACTGACATAAG
GCTTGTGCATCATGATGACTGCTTGGATAGGACATTGTATCCCCTCCTTATCAAGAAGCATTGGCTATGG
ACCAGAAAATGTTTTGTTTGTAAAATGTATACAGCCAGATGGGTGACGAACAATGACAGTTTTGCACCAG
AGGACCCATGCTTCTTTTGTGATGTTTGCTTCCGAATGCTGCACTATGATTCAGAAGGCAACAAACTGGG
GGAATTCCTTGCTTATCCTTATGTTGATCCTGGAACCTTTAATTAA

Translation (411 aa):
MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGDLSLREPPASA
LPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEVIPENTDLVTLGVRKRFLEHR
EETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGELILSVNILYPVIFHKHKEHKPYQTMLVLGSQ
KLTQLRDSIRCVSDLQIGGEFSNTPDQAPEHISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSES
HDRGYGKFQTARMEDFTFNDLCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLW
TRKCFVCKMYTARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH