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Report for CCDS35214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35214.1 Public Homo sapiens X DDX53 24 110 108 CCDS HistoryNCBI Gene:168400Re-query CCDS DB by CCDS ID:35214.1Re-query CCDS DB by GeneID:168400See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35214.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327968.7 ENSP00000368667.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327968.7Link to Ensembl Protein Viewer:ENSP00000368667.2Re-query CCDS DB by Nucleotide ID:ENST00000327968Re-query CCDS DB by Protein ID:ENSP00000368667
Original member Current member NCBI NM_182699.4 NP_874358.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182699.4Link to Protein Sequence:NP_874358.2Re-query CCDS DB by Nucleotide ID:NM_182699Re-query CCDS DB by Protein ID:NP_874358Link to BLAST:NP_874358.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_874358.2 631 Q86TM3 631 100% 0 0

Chromosomal Locations for CCDS 35214.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 23000058 23001953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGTCCCACTGGGCCCCAGAGTGGAAGAGGGCGGAGGCTAATCCAAGAGACCTTGGGGCCAGCTGGGATG
TCAGGGGCAGCAGAGGCAGTGGCTGGAGTGGCCCCTTCGGCCATCAGGGACCGAGAGCAGCAGGCTCCCG
TGAACCACCACTCTGCTTTAAAATAAAGAACAATATGGTTGGTGTGGTCATTGGTTACAGTGGATCAAAA
ATAAAAGATCTACAACATTCGACAAACACTAAAATACAGATCATAAACGGGGAATCTGAAGCAAAAGTCA
GAATTTTTGGCAATAGGGAAATGAAAGCAAAGGCCAAAGCGGCTATAGAAACACTTATTAGAAAACAAGA
AAGCTACAACTCAGAATCCAGTGTGGATAATGCTGCATCCCAAACCCCTATTGGAAGAAATCTAGGCAGA
AATGACATTGTTGGAGAAGCTGAGCCATTGTCAAATTGGGATCGCATTAGGGCAGCAGTCGTGGAGTGCG
AAAAGAGAAAATGGGCAGATCTACCACCAGTTAAGAAAAACTTTTACATAGAATCCAAAGCAACAAGCTG
CATGTCTGAAATGCAGGTGATTAACTGGAGAAAGGAAAATTTCAACATAACGTGTGATGACTTGAAAAGT
GGTGAAAAGCGTCTCATTCCAAAACCAACTTGCAGGTTTAAAGACGCTTTTCAGCAATACCCTGATCTTC
TGAAAAGCATAATAAGGGTAGGGATTGTAAAGCCAACGCCAATTCAGTCACAGGCATGGCCAATTATTCT
ACAAGGAATAGATCTTATAGTAGTTGCACAAACCGGAACAGGGAAAACATTGTCCTATCTAATGCCTGGG
TTTATTCATCTTGATTCTCAACCAATATCTAGAGAGCAAAGGAATGGGCCTGGGATGCTAGTCCTTACAC
CCACTAGAGAGTTGGCTCTTCACGTGGAAGCTGAATGTTCAAAGTATTCATATAAAGGTCTCAAAAGCAT
TTGCATATATGGTGGTAGAAACAGAAATGGACAAATAGAAGACATTAGCAAAGGTGTAGATATCATTATT
GCAACTCCTGGGAGGCTGAATGACCTACAAATGAATAACTCTGTCAACCTAAGAAGCATAACCTACTTGG
TTATAGATGAGGCAGATAAAATGCTGGATATGGAATTTGAACCCCAGATAAGGAAGATTTTATTAGATGT
GCGCCCAGACCGACAGACTGTTATGACAAGTGCAACTTGGCCAGATACTGTACGTCAACTAGCACTTTCT
TATTTGAAAGATCCTATGATTGTTTATGTTGGTAATCTGAATCTAGTGGCTGTAAATACAGTGAAGCAAA
ATATAATTGTTACCACAGAAAAAGAAAAACGAGCTCTCACCCAAGAATTCGTAGAGAACATGTCACCCAA
CGACAAAGTCATCATGTTTGTCAGCCAAAAACATATTGCTGATGACTTGTCAAGCGACTTCAATATCCAA
GGCATATCTGCAGAATCATTACATGGCAACAGTGAACAGAGTGATCAAGAGCGAGCAGTAGAGGACTTTA
AAAGCGGAAACATAAAGATACTGATTACAACTGATATAGTATCCCGAGGTCTTGATCTTAATGATGTCAC
ACATGTATATAATTATGATTTCCCAAGGAATATTGACGTATATGTACACAGAGTAGGGTACATTGGACGG
ACAGGAAAGACTGGCACATCAGTTACCCTCATCACTCAGAGAGATTCGAAAATGGCCGGTGAATTGATTA
AAATTCTGGACAGAGCAAATCAGAGTGTTCCGGAAGATCTTGTAGTAATGGCTGAGCAATACAAGTTAAA
TCAACAAAAGAGGCACAGAGAAACACGATCAAGAAAACCTGGACAAAGACGCAAGGAGTTTTATTTTTTA
AGTTGA

Translation (631 aa):
MSHWAPEWKRAEANPRDLGASWDVRGSRGSGWSGPFGHQGPRAAGSREPPLCFKIKNNMVGVVIGYSGSK
IKDLQHSTNTKIQIINGESEAKVRIFGNREMKAKAKAAIETLIRKQESYNSESSVDNAASQTPIGRNLGR
NDIVGEAEPLSNWDRIRAAVVECEKRKWADLPPVKKNFYIESKATSCMSEMQVINWRKENFNITCDDLKS
GEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPG
FIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIII
ATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALS
YLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQ
GISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGR
TGKTGTSVTLITQRDSKMAGELIKILDRANQSVPEDLVVMAEQYKLNQQKRHRETRSRKPGQRRKEFYFL
S


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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