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Report for CCDS14460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14460.1 Public Homo sapiens X PABPC5 24 110 108 CCDS HistoryNCBI Gene:140886Re-query CCDS DB by CCDS ID:14460.1Re-query CCDS DB by GeneID:140886See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14460.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312600.4 ENSP00000308012.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312600.4Link to Ensembl Protein Viewer:ENSP00000308012.3Re-query CCDS DB by Nucleotide ID:ENST00000312600Re-query CCDS DB by Protein ID:ENSP00000308012
Original member Current member NCBI NM_080832.3 NP_543022.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080832.3Link to Protein Sequence:NP_543022.1Re-query CCDS DB by Nucleotide ID:NM_080832Re-query CCDS DB by Protein ID:NP_543022Link to BLAST:NP_543022.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543022.1 382 Q96DU9-1 382 100% 0 0

Chromosomal Locations for CCDS 14460.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 91435578 91436726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGGGAGCGGGGAGCCTAATCCTGCTGGCAAGAAAAAGAAGTATCTCAAGGCCGCTCTGTACGTGGGTG
ACTTGGACCCAGATGTCACCGAGGACATGCTCTATAAGAAGTTCAGGCCTGCTGGCCCTCTGCGATTCAC
CCGAATCTGCCGTGATCCGGTGACCCGCAGCCCCCTGGGCTATGGGTATGTTAACTTCCGCTTTCCCGCG
GATGCAGAGTGGGCCTTGAACACCATGAATTTTGATTTGATTAATGGAAAACCATTCCGCCTTATGTGGT
CTCAGCCAGATGACCGCTTAAGAAAGTCTGGAGTGGGAAATATATTCATCAAAAACCTGGACAAATCCAT
AGACAATAGGGCCCTGTTTTACTTATTTTCTGCTTTTGGGAACATTCTGTCCTGCAAAGTCGTATGCGAT
GACAACGGCTCTAAGGGTTATGCCTATGTTCACTTTGACAGCCTGGCCGCTGCCAATAGAGCCATCTGGC
ACATGAATGGAGTGCGGCTCAACAACCGCCAGGTGTATGTTGGCAGATTCAAATTCCCAGAAGAGCGGGC
GGCTGAGGTCAGAACCAGGGATAGAGCAACTTTCACCAATGTTTTCGTTAAAAACATTGGAGACGACATA
GATGACGAAAAACTGAAGGAACTTTTCTGTGAATATGGGCCAACTGAGAGTGTTAAAGTAATAAGAGATG
CCAGTGGGAAATCTAAAGGCTTTGGATTTGTGAGATATGAGACACACGAGGCTGCCCAAAAGGCTGTGCT
AGACTTGCATGGAAAGTCCATCGATGGAAAAGTCCTCTATGTAGGGCGAGCACAGAAGAAAATTGAACGC
CTGGCTGAGTTGAGGCGGAGATTTGAACGGCTGAGGTTAAAAGAAAAAAGTCGGCCCCCAGGGGTGCCTA
TCTATATTAAGAACTTGGATGAGACAATCAATGATGAAAAACTGAAGGAGGAATTTTCTTCCTTTGGGTC
AATTAGTCGGGCCAAAGTGATGATGGAAGTGGGGCAAGGCAAAGGATTTGGTGTGGTCTGCTTTTCCTCT
TTTGAAGAGGCTACCAAAGCAGTGGATGAGATGAATGGCCGCATAGTGGGCTCCAAGCCCCTGCATGTCA
CCCTGGGCCAGGCCAGGCGCAGGTGCTGA

Translation (382 aa):
MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPA
DAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD
DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI
DDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER
LAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSS
FEEATKAVDEMNGRIVGSKPLHVTLGQARRRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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