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Report for CCDS13050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13050.1 Public Homo sapiens 20 DDRGK1 24 110 108 CCDS HistoryNCBI Gene:65992Re-query CCDS DB by CCDS ID:13050.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13050.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354488.8 ENSP00000346483.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354488.8Link to Ensembl Protein Viewer:ENSP00000346483.3Re-query CCDS DB by Nucleotide ID:ENST00000354488Re-query CCDS DB by Protein ID:ENSP00000346483
Original member Current member NCBI NM_023935.3 NP_076424.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023935.3Link to Protein Sequence:NP_076424.1Re-query CCDS DB by Nucleotide ID:NM_023935Re-query CCDS DB by Protein ID:NP_076424Link to BLAST:NP_076424.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076424.1 314 Q96HY6-1 314 100% 0 0

Chromosomal Locations for CCDS 13050.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3190653 3190819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3191190 3191238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3191765 3191821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3194830 3194868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3195231 3195353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3200001 3200102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3200342 3200454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3203213 3203416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3204537 3204627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGTGGCGCCTGTGTGGTACTTGGTAGCGGCGGCTCTGCTAGTCGGCTTTATCCTCTTCCTGACTCGCA
GCCGGGGCCGGGCGGCATCAGCCGGCCAAGAGCCACTGCACAATGAGGAGCTGGCAGGAGCAGGCCGGGT
GGCCCAGCCTGGGCCCCTGGAGCCTGAGGAGCCGAGAGCTGGAGGCAGGCCTCGGCGCCGGAGGGACCTG
GGCAGCCGCCTACAGGCCCAGCGTCGAGCCCAGCGGGTGGCCTGGGCAGAAGCAGATGAGAACGAGGAGG
AAGCTGTCATCCTAGCCCAGGAGGAGGAAGGTGTCGAGAAGCCAGCGGAAACTCACCTGTCGGGGAAAAT
TGGAGCTAAGAAACTGCGGAAGCTGGAGGAGAAACAAGCGCGAAAGGCCCAGCGTGAGGCAGAGGAGGCT
GAACGTGAGGAGCGGAAACGACTCGAGTCCCAGCGCGAAGCTGAGTGGAAGAAGGAGGAGGAGCGGCTTC
GCCTGGAGGAGGAGCAGAAGGAGGAGGAGGAGAGGAAGGCCCGCGAGGAGCAGGCCCAGCGGGAGCATGA
GGAGTACCTGAAACTGAAGGAGGCCTTTGTGGTGGAGGAGGAAGGCGTAGGAGAGACCATGACTGAGGAA
CAGTCCCAGAGCTTCCTGACAGAGTTCATCAACTACATCAAGCAGTCCAAGGTTGTGCTCTTGGAAGACC
TGGCTTCCCAGGTGGGCCTACGCACTCAGGACACCATAAATCGCATCCAGGACCTGCTGGCTGAGGGGAC
TATAACAGGTGTGATTGACGACCGGGGCAAGTTCATCTACATAACCCCAGAGGAACTGGCCGCCGTGGCC
AACTTCATCCGACAGCGGGGCCGGGTGTCCATCGCCGAGCTTGCCCAAGCCAGCAACTCCCTCATCGCCT
GGGGCCGGGAGTCCCCTGCCCAAGCCCCAGCCTGA

Translation (314 aa):
MVAPVWYLVAAALLVGFILFLTRSRGRAASAGQEPLHNEELAGAGRVAQPGPLEPEEPRAGGRPRRRRDL
GSRLQAQRRAQRVAWAEADENEEEAVILAQEEEGVEKPAETHLSGKIGAKKLRKLEEKQARKAQREAEEA
EREERKRLESQREAEWKKEEERLRLEEEQKEEEERKAREEQAQREHEEYLKLKEAFVVEEEGVGETMTEE
QSQSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLAEGTITGVIDDRGKFIYITPEELAAVA
NFIRQRGRVSIAELAQASNSLIAWGRESPAQAPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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