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Report for CCDS2723.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2723.1 Public Homo sapiens 3 TGM4 24 110 108 CCDS HistoryNCBI Gene:7047Re-query CCDS DB by CCDS ID:2723.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2723.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296125.9 ENSP00000296125.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296125.9Link to Ensembl Protein Viewer:ENSP00000296125.4Re-query CCDS DB by Nucleotide ID:ENST00000296125Re-query CCDS DB by Protein ID:ENSP00000296125
Original member Current member NCBI NM_003241.4 NP_003232.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003241.4Link to Protein Sequence:NP_003232.2Re-query CCDS DB by Nucleotide ID:NM_003241Re-query CCDS DB by Protein ID:NP_003232Link to BLAST:NP_003232.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003232.2 684 P49221 684 100% 0 0

Chromosomal Locations for CCDS 2723.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 44874679 44874697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44885325 44885498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44887689 44887795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44890603 44890732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44893577 44893695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44896709 44896816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44901524 44901698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44901793 44901931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44903884 44903987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44906949 44907200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44910090 44910368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44910958 44911127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44911270 44911406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44913584 44913725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGATGGATGCATCAAAAGAGCTGCAAGTTCTCCACATTGACTTCTTGAATCAGGACAACGCCGTTTCTC
ACCACACATGGGAGTTCCAAACGAGCAGTCCTGTGTTCCGGCGAGGACAGGTGTTTCACCTGCGGCTGGT
GCTGAACCAGCCCCTACAATCCTACCACCAACTGAAACTGGAATTCAGCACAGGGCCGAATCCTAGCATC
GCCAAACACACCCTGGTGGTGCTCGACCCGAGGACGCCCTCAGACCACTACAACTGGCAGGCAACCCTTC
AAAATGAGTCTGGCAAAGAGGTCACAGTGGCTGTCACCAGTTCCCCCAATGCCATCCTGGGCAAGTACCA
ACTAAACGTGAAAACTGGAAACCACATCCTTAAGTCTGAAGAAAACATCCTATACCTTCTCTTCAACCCA
TGGTGTAAAGAGGACATGGTTTTCATGCCTGATGAGGACGAGCGCAAAGAGTACATCCTCAATGACACGG
GCTGCCATTACGTGGGGGCTGCCAGAAGTATCAAATGCAAACCCTGGAACTTTGGTCAGTTTGAGAAAAA
TGTCCTGGACTGCTGCATTTCCCTGCTGACTGAGAGCTCCCTCAAGCCCACAGATAGGAGGGACCCCGTG
CTGGTGTGCAGGGCCATGTGTGCTATGATGAGCTTTGAGAAAGGCCAGGGCGTGCTCATTGGGAATTGGA
CTGGGGACTACGAAGGTGGCACAGCCCCATACAAGTGGACAGGCAGTGCCCCGATCCTGCAGCAGTACTA
CAACACGAAGCAGGCTGTGTGCTTTGGCCAGTGCTGGGTGTTTGCTGGGATCCTGACTACAGTGCTGAGA
GCGTTGGGCATCCCAGCACGCAGTGTGACAGGCTTCGATTCAGCTCACGACACAGAAAGGAACCTCACGG
TGGACACCTATGTGAATGAGAATGGCGAGAAAATCACCAGTATGACCCACGACTCTGTCTGGAATTTCCA
TGTGTGGACGGATGCCTGGATGAAGCGACCGGATCTGCCCAAGGGCTACGACGGCTGGCAGGCTGTGGAC
GCAACGCCGCAGGAGCGAAGCCAGGGTGTCTTCTGCTGTGGGCCATCACCACTGACCGCCATCCGCAAAG
GTGACATCTTTATTGTCTATGACACCAGATTCGTCTTCTCAGAAGTGAATGGTGACAGGCTCATCTGGTT
GGTGAAGATGGTGAATGGGCAGGAGGAGTTACACGTAATTTCAATGGAGACCACAAGCATCGGGAAAAAC
ATCAGCACCAAGGCAGTGGGCCAAGACAGGCGGAGAGATATCACCTATGAGTACAAGTATCCAGAAGGCT
CCTCTGAGGAGAGGCAGGTCATGGATCATGCCTTCCTCCTTCTCAGTTCTGAGAGGGAGCACAGACGACC
TGTAAAAGAGAACTTTCTTCACATGTCGGTACAATCAGATGATGTGCTGCTGGGAAACTCTGTTAATTTC
ACCGTGATTCTTAAAAGGAAGACCGCTGCCCTACAGAATGTCAACATCTTGGGCTCCTTTGAACTACAGT
TGTACACTGGCAAGAAGATGGCAAAACTGTGTGACCTCAATAAGACCTCGCAGATCCAAGGTCAAGTATC
AGAAGTGACTCTGACCTTGGACTCCAAGACCTACATCAACAGCCTGGCTATATTAGATGATGAGCCAGTT
ATCAGAGGTTTCATCATTGCGGAAATTGTGGAGTCTAAGGAAATCATGGCCTCTGAAGTATTCACGTCTT
TCCAGTACCCTGAGTTCTCTATAGAGTTGCCTAACACAGGCAGAATTGGCCAGCTACTTGTCTGCAATTG
TATCTTCAAGAATACCCTGGCCATCCCTTTGACTGACGTCAAGTTCTCTTTGGAAAGCCTGGGCATCTCC
TCACTACAGACCTCTGACCATGGGACGGTGCAGCCTGGTGAGACCATCCAATCCCAAATAAAATGCACCC
CAATAAAAACTGGACCCAAGAAATTTATCGTCAAGTTAAGTTCCAAACAAGTGAAAGAGATTAATGCTCA
GAAGATTGTTCTCATCACCAAGTAG

Translation (684 aa):
MMDASKELQVLHIDFLNQDNAVSHHTWEFQTSSPVFRRGQVFHLRLVLNQPLQSYHQLKLEFSTGPNPSI
AKHTLVVLDPRTPSDHYNWQATLQNESGKEVTVAVTSSPNAILGKYQLNVKTGNHILKSEENILYLLFNP
WCKEDMVFMPDEDERKEYILNDTGCHYVGAARSIKCKPWNFGQFEKNVLDCCISLLTESSLKPTDRRDPV
LVCRAMCAMMSFEKGQGVLIGNWTGDYEGGTAPYKWTGSAPILQQYYNTKQAVCFGQCWVFAGILTTVLR
ALGIPARSVTGFDSAHDTERNLTVDTYVNENGEKITSMTHDSVWNFHVWTDAWMKRPDLPKGYDGWQAVD
ATPQERSQGVFCCGPSPLTAIRKGDIFIVYDTRFVFSEVNGDRLIWLVKMVNGQEELHVISMETTSIGKN
ISTKAVGQDRRRDITYEYKYPEGSSEERQVMDHAFLLLSSEREHRRPVKENFLHMSVQSDDVLLGNSVNF
TVILKRKTAALQNVNILGSFELQLYTGKKMAKLCDLNKTSQIQGQVSEVTLTLDSKTYINSLAILDDEPV
IRGFIIAEIVESKEIMASEVFTSFQYPEFSIELPNTGRIGQLLVCNCIFKNTLAIPLTDVKFSLESLGIS
SLQTSDHGTVQPGETIQSQIKCTPIKTGPKKFIVKLSSKQVKEINAQKIVLITK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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