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Report for CCDS3929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3929.1 Public Homo sapiens 5 C9 24 110 108 CCDS HistoryNCBI Gene:735Re-query CCDS DB by CCDS ID:3929.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3929.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263408.5 ENSP00000263408.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263408.5Link to Ensembl Protein Viewer:ENSP00000263408.4Re-query CCDS DB by Nucleotide ID:ENST00000263408Re-query CCDS DB by Protein ID:ENSP00000263408
Original member Current member NCBI NM_001737.5 NP_001728.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001737.5Link to Protein Sequence:NP_001728.1Re-query CCDS DB by Nucleotide ID:NM_001737Re-query CCDS DB by Protein ID:NP_001728Link to BLAST:NP_001728.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001728.1 559 P02748 559 100% 0 0

Chromosomal Locations for CCDS 3929.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 39285199 39285233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39288723 39288951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39306617 39306792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39308230 39308358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39311137 39311377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39315775 39316029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39331676 39331814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39341146 39341293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39341556 39341700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39342091 39342196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 39364388 39364464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGTCAGCCTGCCGGAGCTTTGCAGTTGCAATCTGCATTTTAGAAATAAGCATCCTCACAGCACAGTACA
CGACCAGTTATGACCCAGAGCTAACAGAAAGCAGTGGCTCTGCATCACACATAGACTGCAGAATGAGCCC
CTGGAGTGAATGGTCACAATGCGATCCTTGTCTCAGACAAATGTTTCGTTCAAGAAGCATTGAGGTCTTT
GGACAATTTAATGGGAAAAGATGCACCGACGCTGTGGGAGACAGACGACAGTGTGTGCCCACAGAGCCCT
GTGAGGATGCTGAGGATGACTGCGGAAATGACTTTCAATGCAGTACAGGCAGATGCATAAAGATGCGACT
TCGGTGTAATGGTGACAATGACTGCGGAGACTTTTCAGATGAGGATGATTGTGAAAGTGAGCCCCGTCCC
CCCTGCAGAGACAGAGTGGTAGAAGAGTCTGAGCTGGCACGAACAGCAGGCTATGGGATCAACATTTTAG
GGATGGATCCCCTAAGCACACCTTTTGACAATGAGTTCTACAATGGACTCTGTAACCGGGATCGGGATGG
AAACACTCTGACATACTACCGAAGACCTTGGAACGTGGCTTCTTTGATCTATGAAACCAAAGGCGAGAAA
AATTTCAGAACCGAACATTACGAAGAACAAATTGAAGCATTTAAAAGTATCATCCAAGAGAAGACATCAA
ATTTTAATGCAGCTATATCTCTAAAATTTACACCCACTGAAACAAATAAAGCTGAACAATGTTGTGAGGA
AACAGCCTCCTCAATTTCTTTACATGGCAAGGGTAGTTTTCGGTTTTCATATTCCAAAAATGAAACTTAC
CAACTATTTTTGTCATATTCTTCAAAGAAGGAAAAAATGTTTCTGCATGTGAAAGGAGAAATTCATCTGG
GAAGATTTGTAATGAGAAATCGCGATGTTGTGCTCACAACAACTTTTGTGGATGATATAAAAGCTTTGCC
AACTACCTATGAAAAGGGAGAATATTTTGCCTTTTTGGAAACCTATGGAACTCACTACAGTAGCTCTGGG
TCTCTAGGAGGACTCTATGAACTAATATATGTTTTGGATAAAGCTTCCATGAAGCGGAAAGGTGTTGAAC
TAAAAGACATAAAGAGATGCCTTGGGTATCATCTGGATGTATCTCTGGCTTTCTCTGAAATCTCTGTTGG
AGCTGAATTTAATAAAGATGATTGTGTAAAGAGGGGAGAGGGTAGAGCTGTAAACATCACCAGTGAAAAC
CTCATAGATGATGTTGTTTCACTCATAAGAGGTGGAACCAGAAAATATGCATTTGAACTGAAAGAAAAGC
TTCTCCGAGGAACCGTGATTGATGTGACTGACTTTGTCAACTGGGCCTCTTCCATAAATGATGCTCCTGT
TCTCATTAGTCAAAAACTGTCTCCTATATATAATCTGGTTCCAGTGAAAATGAAAAATGCACACCTAAAG
AAACAAAACTTGGAAAGAGCCATTGAAGACTATATCAATGAATTTAGTGTAAGAAAATGCCACACATGCC
AAAATGGAGGTACAGTGATTCTAATGGATGGAAAGTGTTTGTGTGCCTGCCCATTCAAATTTGAGGGAAT
TGCCTGTGAAATCAGTAAACAAAAAATTTCTGAAGGATTGCCAGCCCTAGAGTTCCCCAATGAAAAATAG

Translation (559 aa):
MSACRSFAVAICILEISILTAQYTTSYDPELTESSGSASHIDCRMSPWSEWSQCDPCLRQMFRSRSIEVF
GQFNGKRCTDAVGDRRQCVPTEPCEDAEDDCGNDFQCSTGRCIKMRLRCNGDNDCGDFSDEDDCESEPRP
PCRDRVVEESELARTAGYGINILGMDPLSTPFDNEFYNGLCNRDRDGNTLTYYRRPWNVASLIYETKGEK
NFRTEHYEEQIEAFKSIIQEKTSNFNAAISLKFTPTETNKAEQCCEETASSISLHGKGSFRFSYSKNETY
QLFLSYSSKKEKMFLHVKGEIHLGRFVMRNRDVVLTTTFVDDIKALPTTYEKGEYFAFLETYGTHYSSSG
SLGGLYELIYVLDKASMKRKGVELKDIKRCLGYHLDVSLAFSEISVGAEFNKDDCVKRGEGRAVNITSEN
LIDDVVSLIRGGTRKYAFELKEKLLRGTVIDVTDFVNWASSINDAPVLISQKLSPIYNLVPVKMKNAHLK
KQNLERAIEDYINEFSVRKCHTCQNGGTVILMDGKCLCACPFKFEGIACEISKQKISEGLPALEFPNEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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