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Report for CCDS8295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8295.1 Public Homo sapiens 11 MED17 24 110 108 CCDS HistoryNCBI Gene:9440Re-query CCDS DB by CCDS ID:8295.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8295.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251871.9 ENSP00000251871.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000251871.9Link to Ensembl Protein Viewer:ENSP00000251871.3Re-query CCDS DB by Nucleotide ID:ENST00000251871Re-query CCDS DB by Protein ID:ENSP00000251871
Original member Current member NCBI NM_004268.5 NP_004259.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004268.5Link to Protein Sequence:NP_004259.3Re-query CCDS DB by Nucleotide ID:NM_004268Re-query CCDS DB by Protein ID:NP_004259Link to BLAST:NP_004259.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004259.3 651 Q9NVC6-1 651 100% 0 0

Chromosomal Locations for CCDS 8295.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 93784514 93784763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93788001 93788167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93790574 93790793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93793728 93793864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93793951 93794035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93794908 93795060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93796410 93796540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93797535 93797719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93801835 93801972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93807518 93807635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93809717 93809876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93811853 93812064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1956 nt):
ATGTCCGGGGTGCGCGCAGTGCGGATCAGCATCGAATCGGCCTGCGAGAAGCAGGTCCATGAGGTGGGCC
TGGATGGCACCGAGACGTACCTGCCCCCGCTGTCCATGTCGCAGAATCTGGCGCGTCTGGCCCAGCGGAT
AGACTTCAGCCAGGGTTCGGGCTCCGAGGAGGAGGAGGCGGCGGGGACCGAGGGCGACGCGCAGGAGTGG
CCGGGCGCCGGGTCCAGCGCAGACCAGGACGACGAGGAAGGAGTGGTAAAATTTCAGCCTTCCCTTTGGC
CTTGGGACTCAGTGAGGAACAATTTGAGAAGTGCCCTGACAGAGATGTGTGTTCTCTATGATGTTCTCAG
TATTGTTAGGGATAAAAAATTTATGACTCTTGATCCTGTCTCTCAGGATGCACTTCCTCCAAAACAGAAT
CCTCAGACGTTGCAATTGATATCTAAAAAGAAGTCACTTGCTGGAGCAGCACAAATCTTATTGAAGGGGG
CAGAAAGACTGACTAAATCAGTTACCGAAAACCAAGAAAACAAGCTACAAAGAGACTTCAATTCTGAGCT
TTTGCGATTACGGCAACACTGGAAACTTCGAAAAGTTGGAGATAAAATTCTCGGAGATCTGAGCTACAGA
AGTGCAGGATCTCTCTTTCCTCATCATGGTACATTTGAAGTAATAAAGAATACAGATCTCGATCTGGATA
AAAAGATACCTGAAGATTACTGTCCTCTTGATGTCCAAATTCCTAGTGATTTAGAGGGGTCTGCATATAT
CAAGGTTTCAATACAAAAACAGGCTCCAGATATAGGTGACCTCGGCACAGTTAACCTCTTCAAACGACCT
TTGCCCAAATCCAAACCAGGTTCCCCACATTGGCAGACAAAATTAGAAGCGGCACAGAATGTTCTCTTAT
GTAAAGAAATTTTTGCACAGCTCTCTCGGGAAGCTGTTCAAATTAAATCACAAGTCCCTCACATTGTGGT
GAAAAACCAGATTATCTCTCAGCCCTTTCCGAGCTTGCAGTTATCTATTTCTTTGTGCCATTCCTCAAAT
GATAAGAAATCCCAAAAATTTGCTACTGAGAAGCAATGTCCGGAGGACCACCTTTATGTCCTAGAGCATA
ATTTGCATCTACTGATTAGAGAGTTTCATAAACAGACCTTGAGTTCCATCATGATGCCTCATCCAGCAAG
TGCACCTTTTGGCCACAAGAGAATGAGACTTTCGGGTCCTCAAGCTTTTGATAAAAATGAAATTAATTCA
TTACAGTCCAGTGAAGGGCTTCTGGAAAAAATAATTAAACAAGCAAAGCATATTTTTCTAAGGAGTAGAG
CTGCTGCAACCATTGACAGCTTAGCAAGCCGAATTGAGGATCCTCAGATACAGGCTCATTGGTCAAATAT
CAATGATGTTTATGAATCTAGTGTGAAAGTTTTAATCACATCACAAGGCTATGAACAAATATGCAAGTCC
ATTCAACTGCAATTGAATATTGGAGTTGAGCAGATTCGAGTTGTACATAGAGATGGAAGAGTAATTACAC
TGTCTTATCAGGAGCAGGAGCTACAGGATTTTCTTCTGTCTCAGATGTCACAGCACCAGGTACATGCAGT
TCAGCAACTCGCCAAGGTTATGGGCTGGCAAGTACTGAGCTTCAGTAATCATGTGGGACTTGGACCTATA
GAGAGCATTGGTAATGCATCTGCCATCACGGTGGCCTCCCCAAGTGGTGACTATGCTATTTCAGTTCGTA
ATGGACCTGAAAGTGGCAGCAAGATTATGGTTCAGTTTCCTCGTAACCAATGTAAAGACCTTCCAAAAAG
TGATGTTTTACAAGATAACAAATGGAGTCATCTTCGTGGGCCATTCAAAGAAGTTCAGTGGAATAAAATG
GAAGGTCGAAATTTTGTTTATAAAATGGAGCTGCTTATGTCTGCACTTAGCCCTTGTCTACTATGA

Translation (651 aa):
MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEAAGTEGDAQEW
PGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDKKFMTLDPVSQDALPPKQN
PQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFNSELLRLRQHWKLRKVGDKILGDLSYR
SAGSLFPHHGTFEVIKNTDLDLDKKIPEDYCPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRP
LPKSKPGSPHWQTKLEAAQNVLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSN
DKKSQKFATEKQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINS
LQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLITSQGYEQICKS
IQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPI
ESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQCKDLPKSDVLQDNKWSHLRGPFKEVQWNKM
EGRNFVYKMELLMSALSPCLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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