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Report for CCDS57599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57599.1 Public Mus musculus 7 Cttn 23 108 98 CCDS HistoryNCBI Gene:13043Re-query CCDS DB by CCDS ID:57599.1Re-query CCDS DB by GeneID:13043See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033407.12 ENSMUSP00000033407.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033407.12Link to Ensembl Protein Viewer:ENSMUSP00000033407.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033407Re-query CCDS DB by Protein ID:ENSMUSP00000033407
Original member NCBI NM_001252572.1 NP_001239501.1 Updated not alive Link to Nucleotide Sequence:NM_001252572.1Link to Protein Sequence:NP_001239501.1Re-query CCDS DB by Nucleotide ID:NM_001252572Re-query CCDS DB by Protein ID:NP_001239501
Current member NCBI NM_001252572.2 NP_001239501.1 Accepted alive Link to Nucleotide Sequence:NM_001252572.2Link to Protein Sequence:NP_001239501.1Re-query CCDS DB by Nucleotide ID:NM_001252572Re-query CCDS DB by Protein ID:NP_001239501Link to BLAST:NP_001239501.1

Chromosomal Locations for CCDS 57599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 144436965 144437101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144437949 144438020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144438766 144438931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144440009 144440098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144441699 144441847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144445803 144445872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144449560 144449615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144452027 144452137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144452548 144452658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144454676 144454786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144456441 144456495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144457669 144457779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144461179 144461308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144463303 144463376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 144463912 144463998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGTGGAAAGCCTCTGCAGGCCATGCTGTGTCCATCACGCAGGATGATGGAGGAGCTGATGACTGGGAGA
CTGATCCTGATTTTGTGAATGATGTGAGTGAAAAGGAGCAGAGATGGGGTGCTAAAACCGTGCAGGGATC
GGGGCACCAGGAACACATCAACATTCACAAGCTTCGAGAGAATGTCTTCCAAGAACACCAGACGCTCAAG
GAGAAGGAGCTGGAAACGGGACCCAAGGCTTCCCACGGCTATGGCGGGAAGTTCGGTGTGGAGCAGGATA
GGATGGACAGATCAGCCGTGGGCCATGAGTACCAGTCGAAGCTTTCCAAGCACTGCTCACAAGTGGACTC
GGTCCGGGGCTTCGGAGGCAAGTTCGGTGTCCAGATGGACAGGGTGGATCAGTCTGCTGTAGGCTTTGAA
TACCAGGGGAAGACTGAGAAGCATGCCTCCCAGAAAGACTACTCTAGTGGCTTCGGTGGCAAATACGGTG
TGCAAGCTGACCGTGTAGACAAGAGTGCCGTGGGCTTTGACTACCAGGGCAAGACGGAGAAGCATGAGTC
TCAGAAAGATTACTCCAAAGGTTTTGGTGGCAAATATGGGATTGACAAGGACAAGGTGGATAAAAGTGCT
GTGGGCTTTGAGTATCAAGGCAAGACAGAGAAGCACGAATCCCAGAAAGACTATGTAAAAGGCTTTGGAG
GAAAGTTTGGTGTGCAGACAGACAGACAGGACAAGTGTGCCCTTGGCTGGGACCATCAGGAGAAGCTGCA
GCTGCATGAATCCCAAAAAGACTATGCCAAAGGATTCGGCGGGAAGTATGGGGTGCAGAAGGATCGGATG
GACAAGAATGCATCCACCTTTGAAGAAGTGGTCCAGGTGCCATCTGCCTATCAGAAGACTGTCCCCATTG
AGGCCGTAACCAGCAAAACCAGTAATATCCGTGCTAACTTTGAAAACCTGGCAAAGGAGAGAGAGCAGGA
GGACAGGCGGAAGGCAGAAGCCGAGAGAGCTCAGCGGATGGCCAAAGAAAGACAGGAGCAGGAGGAGGCG
CGCAGGAAGCTGGAAGAGCAAGCCAGAGCCAAGAAGCAGACGCCCCCTGCATCCCCTAGTCCTCAACCAA
TTGAAGACAGACCACCCTCCAGCCCCATCTATGAGGATGCAGCTCCGTTCAAGGCCGAGCCGAGCTACCG
AGGTAGCGAACCTGAGCCTGAGTACAGCATCGAGGCCGCAGGCATTCCTGAGGCTGGCAGCCAGCAAGGC
CTGACCTATACATCAGAGCCCGTGTACGAGACTACAGAGGCTCCTGGCCACTATCAAGCAGAGGATGACA
CCTACGATGGGTATGAGAGTGACCTGGGCATCACAGCCATCGCCCTGTATGACTACCAGGCTGCTGGCGA
TGATGAGATCTCCTTTGACCCTGATGACATCATCACCAACATAGAAATGATTGACGATGGCTGGTGGCGT
GGGGTGTGCAAGGGCAGATACGGGCTCTTCCCAGCCAACTATGTGGAGCTGCGGCAGTAG

Translation (509 aa):
MWKASAGHAVSITQDDGGADDWETDPDFVNDVSEKEQRWGAKTVQGSGHQEHINIHKLRENVFQEHQTLK
EKELETGPKASHGYGGKFGVEQDRMDRSAVGHEYQSKLSKHCSQVDSVRGFGGKFGVQMDRVDQSAVGFE
YQGKTEKHASQKDYSSGFGGKYGVQADRVDKSAVGFDYQGKTEKHESQKDYSKGFGGKYGIDKDKVDKSA
VGFEYQGKTEKHESQKDYVKGFGGKFGVQTDRQDKCALGWDHQEKLQLHESQKDYAKGFGGKYGVQKDRM
DKNASTFEEVVQVPSAYQKTVPIEAVTSKTSNIRANFENLAKEREQEDRRKAEAERAQRMAKERQEQEEA
RRKLEEQARAKKQTPPASPSPQPIEDRPPSSPIYEDAAPFKAEPSYRGSEPEPEYSIEAAGIPEAGSQQG
LTYTSEPVYETTEAPGHYQAEDDTYDGYESDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWR
GVCKGRYGLFPANYVELRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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