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Report for CCDS39588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39588.1 Public Mus musculus 6 Oxtr 23 108 98 CCDS HistoryNCBI Gene:18430Re-query CCDS DB by CCDS ID:39588.1Re-query CCDS DB by GeneID:18430See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39588.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053306.7 ENSMUSP00000051132.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053306.7Link to Ensembl Protein Viewer:ENSMUSP00000051132.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053306Re-query CCDS DB by Protein ID:ENSMUSP00000051132
Original member NCBI NM_001081147.2 NP_001074616.1 Updated not alive Link to Nucleotide Sequence:NM_001081147.2Link to Protein Sequence:NP_001074616.1Re-query CCDS DB by Nucleotide ID:NM_001081147Re-query CCDS DB by Protein ID:NP_001074616
Current member NCBI NM_001081147.3 NP_001074616.1 Accepted alive Link to Nucleotide Sequence:NM_001081147.3Link to Protein Sequence:NP_001074616.1Re-query CCDS DB by Nucleotide ID:NM_001081147Re-query CCDS DB by Protein ID:NP_001074616Link to BLAST:NP_001074616.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074616.1 388 P97926 388 100% 0 0

Chromosomal Locations for CCDS 39588.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 112477074 112477321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112488879 112489797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGAGGGCACGCCCGCAGCCAACTGGAGTATCGAGTTGGACCTCGGGAGTGGAGTGCCACCAGGGGCGG
AGGGTAACCTCACGGCCGGGCCGCCACGACGCAACGAGGCCCTGGCGCGCGTGGAGGTGGCGGTCCTGTG
TCTCATACTGTTCCTGGCTCTGAGTGGCAACGCGTGCGTGCTGCTGGCGCTGCGTACGACGCGCCACAAG
CACTCGCGCCTCTTCTTTTTCATGAAGCACCTGAGCATCGCCGACCTGGTGGTGGCCGTGTTCCAGGTTC
TCCCGCAGCTGCTGTGGGACATCACCTTCCGCTTCTACGGGCCCGACCTGCTGTGTCGTCTGGTCAAATA
CTTGCAGGTGGTGGGCATGTTCGCCTCCACCTACCTGCTGTTGCTGATGTCGCTCGACCGCTGCCTGGCC
ATCTGCCAGCCGCTGCGCTCACTGCGCCGCCGAACCGACCGCCTGGCGGTGCTGGCGACGTGGCTCGGCT
GCCTGGTGGCCAGCGTGCCGCAGGTGCACATTTTCTCGCTGCGCGAAGTGGCGGACGGCGTCTTCGATTG
CTGGGCGGTCTTCATCCAGCCCTGGGGACCCAAGGCCTACGTCACGTGGATCACGCTCGCCGTCTACATT
GTACCGGTCATCGTGCTGGCCGCCTGCTATGGTCTCATCAGCTTCAAGATCTGGCAGAATCTGCGACTCA
AGACGGCAGCCGCGGCGGCAGCTGCCGAGGGGAGTGACGCAGCCGGTGGAGCTGGCCGTGCGGCGTTGGC
ACGGGTCAGTAGTGTCAAGCTTATCTCCAAGGCCAAAATCCGCACAGTGAAGATGACCTTCATCATTGTT
CTGGCCTTCATCGTGTGCTGGACGCCTTTCTTCTTCGTGCAGATGTGGAGCGTCTGGGACGTCAATGCGC
CCAAAGAAGCTTCTGCCTTCATCATTGCCATGCTCTTGGCCAGCCTCAACAGCTGCTGCAACCCATGGAT
CTACATGCTCTTCACGGGCCATCTCTTCCACGAACTCGTGCAGCGCTTCCTCTGCTGCTCTGCTCGGTAC
CTGAAGGGCAGCCGGCCTGGAGAGACGAGCATTAGCAAGAAAAGCAACTCCTCCACCTTCGTCCTGAGTC
GTCGCAGCTCGAGTCAGAGGAGCTGTTCTCAACCATCCTCGGCATGA

Translation (388 aa):
MEGTPAANWSIELDLGSGVPPGAEGNLTAGPPRRNEALARVEVAVLCLILFLALSGNACVLLALRTTRHK
HSRLFFFMKHLSIADLVVAVFQVLPQLLWDITFRFYGPDLLCRLVKYLQVVGMFASTYLLLLMSLDRCLA
ICQPLRSLRRRTDRLAVLATWLGCLVASVPQVHIFSLREVADGVFDCWAVFIQPWGPKAYVTWITLAVYI
VPVIVLAACYGLISFKIWQNLRLKTAAAAAAAEGSDAAGGAGRAALARVSSVKLISKAKIRTVKMTFIIV
LAFIVCWTPFFFVQMWSVWDVNAPKEASAFIIAMLLASLNSCCNPWIYMLFTGHLFHELVQRFLCCSARY
LKGSRPGETSISKKSNSSTFVLSRRSSSQRSCSQPSSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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