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Report for CCDS52344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52344.1 Public Mus musculus 7 Trim12c 23 108 98 CCDS HistoryNCBI Gene:319236Re-query CCDS DB by CCDS ID:52344.1Re-query CCDS DB by GeneID:319236See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52344.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059037.14 ENSMUSP00000060100.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059037.14Link to Ensembl Protein Viewer:ENSMUSP00000060100.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000059037Re-query CCDS DB by Protein ID:ENSMUSP00000060100
Original member Current member EBI ENSMUST00000130139.2 ENSMUSP00000116775.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130139.2Link to Ensembl Protein Viewer:ENSMUSP00000116775.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000130139Re-query CCDS DB by Protein ID:ENSMUSP00000116775
Original member Current member NCBI NM_001146007.1 NP_001139479.1 Accepted alive Link to Nucleotide Sequence:NM_001146007.1Link to Protein Sequence:NP_001139479.1Re-query CCDS DB by Nucleotide ID:NM_001146007Re-query CCDS DB by Protein ID:NP_001139479Link to BLAST:NP_001139479.1
Original member Current member NCBI NM_175677.4 NP_783608.3 Accepted alive Link to Nucleotide Sequence:NM_175677.4Link to Protein Sequence:NP_783608.3Re-query CCDS DB by Nucleotide ID:NM_175677Re-query CCDS DB by Protein ID:NP_783608Link to BLAST:NP_783608.3

Chromosomal Locations for CCDS 52344.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104340775 104341373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104341619 104341645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104341878 104341975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104343056 104343078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104344899 104345129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104346649 104346744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104347928 104348347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGCTTCACAATTCATGAAGAATTTAAAGGAGGAAGTGACCTGTCCTCTCTGTCTGAACCTGATGGTGA
AACCTGTGAGTGCAGATTGTGGTCACAGCTTCTGCCAAGGCTGCATCACGGTGTACTTTGAATCCACCAA
ATGCGATAAGGAAATGTTCAGTTGCCCTGTGTGCCGACTTAGTTACCAGTCTAGCAATCTGAGGCCTAAT
CTACATGTGGCCAACATAGTAGAGAGGCTCAAAGAGTTCAAGCCTAGCCCAGAAGAGGAGCAGAAAGTGT
TTAACTGTGCAAGACATGGAGAGAAACTCCAGCTCTTCTGTAGGAAGGACATGATGGCCATCTGCTGGCT
TTGTGAGCGATCTCAGGAGCACCGGGGCCACAAAACAGCTCTCATTGAAGAGGTGGCCCAGGAGTACAAG
GAGCAGCTGCAGGTAGTTCTGCAAAGGCTGATGGCAGACAAGAAAGAATTTGAAAACTGGAAAGATGACC
TTCAGAAGGATAGAACTTACTGGGAGAATCAAATACAGAAAGATGTGGAGAATGTTCAGTCAGAGTTTAA
ACGAATGAGGGATATCATGAACTCTGAAGAGAAGAAGGAATTGCAGAAGCTGAAGCAAGAGAAGGAAAAC
ATTATCAACAAACTGGCAGAGTCTGAAAATGAGCATGCTCAGCAGAGCAAGTTGCTAGAAGACTTCATTT
CAGATGTGGAACATCAGTTACAGTGCTCAGACATAGAAATACTGCAGGGTGTGGAGAACATCATAAAACG
GAGTCATACTTTTTCGATGAAGAAGCCCAAAGCCATCGCCAGGGAACAAAGAAAGTTCCGAGCCCCTGAC
CTGCAAGGCATGCTGCAAGTGCTGCAAGAGGTCACAGAGGCTCAACGCTACTGGGTTCAGGTGACGCTGG
TTCAAAACAACAATCCAAACATTGCCATTACTGATGACAAAAGGCAAATACGATATGAAGACCTCCAAGC
AAGGAATCTTGAACATGGCTGTGAAAACTCTCATGAAGGTGTCCTGGGACACCCAGTTATCCAATCAGGA
AAACATTACTGGGAAGTAGATGTGTCTGGAAAAGGTGCTTGGGTTCTGGGGTTAAGTGATGGAAGCTACC
TCTTCAATCCAATATTTCGTTCAAATGCTGAAAGAAACCCTTTATTTCGCAGGGGGATTAAGAATGATTC
ACATTATCAACCAAAATATGGCTTCTGGGTTATAGGGCTGTGGAAAAAGTCTGTGTATAATGCTTTTGAG
GAGTGTCCTTTCACAGGCAAGCCCAGTGTCTTGACCCTGTCTCTGATGGTCCCGCCCTGTCGTGTTGGTG
TTTTCCTTGACTATGCAGCTGGGACTCTCTCATTTTACAATATTTCCAACAATGGGACTCTTATCTACAG
ATTCTGTACAGCTTCCTTTCCTGATAGGGTTTTTCCATATTTTAATCCCATGGGAAGTTCAGAGCCCATG
ACAATTTGCTGGCCAGACTCTTAA

Translation (497 aa):
MASQFMKNLKEEVTCPLCLNLMVKPVSADCGHSFCQGCITVYFESTKCDKEMFSCPVCRLSYQSSNLRPN
LHVANIVERLKEFKPSPEEEQKVFNCARHGEKLQLFCRKDMMAICWLCERSQEHRGHKTALIEEVAQEYK
EQLQVVLQRLMADKKEFENWKDDLQKDRTYWENQIQKDVENVQSEFKRMRDIMNSEEKKELQKLKQEKEN
IINKLAESENEHAQQSKLLEDFISDVEHQLQCSDIEILQGVENIIKRSHTFSMKKPKAIAREQRKFRAPD
LQGMLQVLQEVTEAQRYWVQVTLVQNNNPNIAITDDKRQIRYEDLQARNLEHGCENSHEGVLGHPVIQSG
KHYWEVDVSGKGAWVLGLSDGSYLFNPIFRSNAERNPLFRRGIKNDSHYQPKYGFWVIGLWKKSVYNAFE
ECPFTGKPSVLTLSLMVPPCRVGVFLDYAAGTLSFYNISNNGTLIYRFCTASFPDRVFPYFNPMGSSEPM
TICWPDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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