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Report for CCDS17369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17369.1 Public Mus musculus 3 Clrn1 23 108 98 CCDS HistoryNCBI Gene:229320Re-query CCDS DB by CCDS ID:17369.1Re-query CCDS DB by GeneID:229320See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072551.6 ENSMUSP00000072363.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072551.6Link to Ensembl Protein Viewer:ENSMUSP00000072363.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072551Re-query CCDS DB by Protein ID:ENSMUSP00000072363
Original member Current member NCBI NM_153386.3 NP_700435.1 Accepted alive Link to Nucleotide Sequence:NM_153386.3Link to Protein Sequence:NP_700435.1Re-query CCDS DB by Nucleotide ID:NM_153386Re-query CCDS DB by Protein ID:NP_700435Link to BLAST:NP_700435.1

Chromosomal Locations for CCDS 17369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 58846186 58846451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58884788 58885040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGCCAAGCCAGCAGAAGAAGATCATCTTTTGCATGGCTGGCGTACTGAGCTTTCTCTGTGCTCTTGGAG
TGGTGACAGCAGTGGGCACCCCACTGTGGGTTAAAGCCACTATCCTCTGCAAAACAGGGGCTCTGCTTGT
CAACGCGTCAGGGAAGGAGCTGGACAAGTTCATGGGCGAGATGCAGTATGGCCTTTTCCACGGAGAAGGC
GTAAGGCAATGTGGGTTAGGAGCAAGGCCTTTCCGGTTCTCATGCTCCTGTGGCTGTCTTGTCATGATAT
TGTTTGCCTCTGAAGTGAAAGTCCACCGCCTTTCAGAGAAAATTGCAAATTTTAAAGAAGGGACCTATGC
CTACAGAACACAAAACGAAAACTATACCACCTCATTCTGGGTTGTTTTCATTTGCTTTTTTGTTCATTTT
TTGAATGGGCTCCTGATACGACTTGCTGGATTTCAGTTCCCTTTCACAAAATCTAAAGAAACAGAGACCA
CTAATGTAGCTTCAGATTTAATGTACTGA

Translation (172 aa):
MPSQQKKIIFCMAGVLSFLCALGVVTAVGTPLWVKATILCKTGALLVNASGKELDKFMGEMQYGLFHGEG
VRQCGLGARPFRFSCSCGCLVMILFASEVKVHRLSEKIANFKEGTYAYRTQNENYTTSFWVVFICFFVHF
LNGLLIRLAGFQFPFTKSKETETTNVASDLMY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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