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Report for CCDS15656.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15656.2 Public Mus musculus 2 Frmd4a 23 108 98 CCDS HistoryNCBI Gene:209630Re-query CCDS DB by CCDS ID:15656.2Re-query CCDS DB by GeneID:209630See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 15656.1
The coding region has been updated to extend the N-terminus. The update changes the protein length from 1031 aa to 1042 aa, but the splice sites are unaffected. The uAUG has a strong Kozak signal and the sequence is well-conserved: there is no human transcript evidence for the first exon of this mouse update, but the sequence is conserved in human and other species.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15656.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091497.10 ENSMUSP00000089079.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091497.10Link to Ensembl Protein Viewer:ENSMUSP00000089079.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000091497Re-query CCDS DB by Protein ID:ENSMUSP00000089079
Original member Current member NCBI NM_172475.3 NP_766063.3 Accepted alive Link to Nucleotide Sequence:NM_172475.3Link to Protein Sequence:NP_766063.3Re-query CCDS DB by Nucleotide ID:NM_172475Re-query CCDS DB by Protein ID:NP_766063Link to BLAST:NP_766063.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766063.3 1042 Q8BIE6-2 1042 100% 0 0

Chromosomal Locations for CCDS 15656.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 4153078 4153110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4431199 4431264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4473121 4473215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4484040 4484132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4497989 4498073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4513789 4513845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4514997 4515019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4529792 4529875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4534546 4534611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4535173 4535230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4537239 4537325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4560214 4560290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4566052 4566190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4572298 4572439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4586361 4586494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4590620 4590742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4594539 4594767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4597338 4597394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4601115 4601355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4602115 4602279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4603377 4604251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4605970 4606066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4610967 4611069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3129 nt):
ATGGAAGGGCTCCTATCTCCGATGAGAACCAAGATGACGGAGGGCCGTCGATGTCAAGTACATCTCCTTG
ATGACAGGAAGCTGGAGCTGCTAGTACAGCCCAAGCTTTTGGCCAAGGAGCTTCTTGACCTCGTGGCCTC
TCATTTCAACCTGAAGGAGAAGGAGTACTTTGGAATAGCATTCACAGATGAGACGGGACACTTGAATTGG
CTCCAGCTCGATCGGAGAGTCCTGGAGCATGACTTCCCCAAAAAGTCTGGGCCGGTGGTTCTGTACTTCT
GTGTCAGATTCTACATAGAGAGCATCTCCTACCTGAAGGACAATGCTACCATTGAGCTCTTCTTCCTGAA
TGCCAAGTCCTGCATCTACAAGGAGCTGATTGATGTTGACAGTGAAGTGGTATTTGAATTAGCTTCCTAT
ATTTTACAGGAAGCAAAAGGAGATTTCTCTAGCAATGAGGTGGTGAGAAGTGATCTGAAAAAGCTGCCAG
CGCTACCCACCCAAGCCCTGAAGGAACACCCCTCCCTGGCCTACTGTGAAGACAGAGTCATTGAGTACTA
CAAGAAGCTGAATGGCCAGACGAGGGGACAAGCAATCGTGAACTACATGAGTATCGTGGAGTCTCTGCCA
ACCTACGGTGTTCACTATTATGCAGTGAAAGACAAGCAGGGGATACCATGGTGGCTGGGACTGAGCTACA
AAGGAATTTTCCAGTATGACTACCATGATAAAGTGAAGCCAAGGAAGATATTTCAATGGAGACAGTTGGA
GAATCTGTATTTCAGGGAAAAGAAGTTTTCCGTGGAAGTTCATGACCCTCGCAGGGCTTCAGTGACCAGG
AGGACTTTTGGGCACAGTGGCATTGCCGTGCACACCTGGTATGCGTGTCCGGCATTGATCAAGTCCATTT
GGGCGATGGCTATTAGCCAGCATCAGTTCTATCTGGACAGAAAGCAGAGTAAGTCCAAGATCCATGCGGC
CCGAAGTCTGAGCGAGATCGCCATTGACCTGACGGAAACAGGGACCCTGAAGACCTCAAAGCTGGCCAAC
ATGGGGAGCAAGGGGAAGATCATCAGCGGGAGCAGTGGGAGTCTGCTGTCCTCAGGTTCTCAGGAATCAG
ATAGCTCGCAGTCGGCCAAGAAAGACATGTTGGCTGCCTTGAAATCCAGGCAGGAAGCTCTGGAGGAGAC
GCTGCGCCAGAGGCTGGAGGAACTGAAGAGATTGTGTCTCCGGGAAGCTGAACTCACAGGAAAATTGCCT
GTGGAATATCCCCTGGATCCAGGCGAGGAACCACCTATTGTTCGGAGGAGAATTGGAACAGCCTTCAAGC
TGGATGAACAAAAAATCCTGCCTAAAGGAGAGGAAGCTGAGCTGGAACGCCTGGAACGAGAGTTTGCGAT
TCAGTCCCAGATCACAGAGGCCGCCCGCCGTCTAGCCAGTGACCCCAATGTCAGCAAAAAACTGAAGAAG
CAAAGGAAGACCTCTTATTTGAATGCACTGAAGAAGCTGCAGGAGATTGAAAATGCAATCAACGAGAACC
GCATCAAGTCAGGGAAGAAACCCACCCAGAGGGCTTCACTTGTCATCGATGATGGAAATATCGCCAGCGA
AGACAGCTCTCTCTCGGATGCCCTCGTTCTGGAAGATGAAGACTCTCAGGTTACCAGCACAATATCCCCC
TTACAGTCGCCACACAAGGGACTCCCTCCTCGGCCACCTTCATCACACAACAGGCCTCCTCCCCCACAGT
CCCTGGAGGGACTCAGGCAGCTGCACTATCACCGTACCGACTATGACAAGTCACCCTTAAAGCCCAAAAT
GTGGAGCGAGTCATCTTTAGATGAGCCTTATGAGAAGGTGAAGAAACGCTCCTCCCACGGCCATTCCAGC
AGCCACAAGCGCTTCCCCAGCACAGGAAGCTGTACCGAGGCAGGAGTAAGCAGCTCCTTGCAGAACAGTC
CCATCCGAAGCCTCCCACATTGGAATTCCCAGTCTAGCATGCCATCCACCCCAGACCTGCGCGTCCGGAG
TCCCCACTATGTTCATTCCACAAGGTCAGTGGACATCAGCCCCACGAGACTGCACAGCCTTGCACTGCAC
TTTAGGCATCGAAGCTCCAGCCTGGAGTCCCAGGGCAAGCTCCTGGGCTCGGAGAACGACACCGGAAGCC
CCGACTTCTACACCCCGAGGACTCGTAGCAGCAATGGCTCAGACCCCATGGACGACTGCTCGTCCTGCAC
CAGCCACTCGAGCTCAGAGCACTACTACCCAGCACAGATGAACGCCAACTACTCAACGCTGGCTGAGGAC
TCGCCGTCCAAGGCGCGGCAGCGACAGCGGCAGAGGCAGCGGGCAGCAGGCGCCCTGGGCTCAGCCAGCT
CTGGCAGCATGCCCAACCTGGCGGCCCGCAGCGGGGCTGCAAGCACTGGAGGTGGCGTGTACCTGCACAG
CCAGAGCCAGCCCAGCTCTCAGTACCGCATCAAGGAGTACCCACTATATATCGAGGGCAGTGCCACACCC
GTGGTGGTACGCAGCCTGGAGAGCGACCAGGAGGGCCACTACAGCGTCAAAGCGCAGTTTAAGACCTCCA
ACTCTTACACAGCTGGCGGCCTGTTCAAAGAGAGCTGGCGCGGGGGTGGCGACGAGGGGGATGCAGGCCG
CCTTACACCATCTCGGTCTCAGATCCTGCGGACTCCTTCGTTGGGGCGTGACGGCGCCCACGACAAAGGC
TCCGGCCGTGCCGCCGTGTCTGATGAGCTGCGCCAGTGGTACCAGCGCTCCACAGCCTCGCATAAGGAGC
ACAGCCGTCTGTCACACACCAGCTCCACCTCCTCGGACAGCGGCTCTCAGTACAGCACCTCTTCCCAGAG
CACCTTCGTGGCGCACAGCAGGGTCACCAGGATGCCCCAGATGTGCAAGGCCACGTCAGCTGCCTTACCT
CAAAGCCAGAGAAGCTCAACACCGTCCAGTGAAATTGGAGCCACCCCACCAAGCAGCCCCCACCACATCC
TGACCTGGCAGACTGGGAGCTACAGTGACAGCTGCTTCCTGGATTCCTCCCTCTATCCAGAGCTAGCTGA
TGTCCAATGGTACGGGCAGGAAAAAGCCAAGCCCGGGACCCTCGTGTGA

Translation (1042 aa):
MEGLLSPMRTKMTEGRRCQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKEYFGIAFTDETGHLNW
LQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYKELIDVDSEVVFELASY
ILQEAKGDFSSNEVVRSDLKKLPALPTQALKEHPSLAYCEDRVIEYYKKLNGQTRGQAIVNYMSIVESLP
TYGVHYYAVKDKQGIPWWLGLSYKGIFQYDYHDKVKPRKIFQWRQLENLYFREKKFSVEVHDPRRASVTR
RTFGHSGIAVHTWYACPALIKSIWAMAISQHQFYLDRKQSKSKIHAARSLSEIAIDLTETGTLKTSKLAN
MGSKGKIISGSSGSLLSSGSQESDSSQSAKKDMLAALKSRQEALEETLRQRLEELKRLCLREAELTGKLP
VEYPLDPGEEPPIVRRRIGTAFKLDEQKILPKGEEAELERLEREFAIQSQITEAARRLASDPNVSKKLKK
QRKTSYLNALKKLQEIENAINENRIKSGKKPTQRASLVIDDGNIASEDSSLSDALVLEDEDSQVTSTISP
LQSPHKGLPPRPPSSHNRPPPPQSLEGLRQLHYHRTDYDKSPLKPKMWSESSLDEPYEKVKKRSSHGHSS
SHKRFPSTGSCTEAGVSSSLQNSPIRSLPHWNSQSSMPSTPDLRVRSPHYVHSTRSVDISPTRLHSLALH
FRHRSSSLESQGKLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTSHSSSEHYYPAQMNANYSTLAED
SPSKARQRQRQRQRAAGALGSASSGSMPNLAARSGAASTGGGVYLHSQSQPSSQYRIKEYPLYIEGSATP
VVVRSLESDQEGHYSVKAQFKTSNSYTAGGLFKESWRGGGDEGDAGRLTPSRSQILRTPSLGRDGAHDKG
SGRAAVSDELRQWYQRSTASHKEHSRLSHTSSTSSDSGSQYSTSSQSTFVAHSRVTRMPQMCKATSAALP
QSQRSSTPSSEIGATPPSSPHHILTWQTGSYSDSCFLDSSLYPELADVQWYGQEKAKPGTLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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