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Report for CCDS72332.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
72332.1 |
Public |
Mus musculus |
X |
Tfe3 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:209446](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:72332.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:209446](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome X in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 72332.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000101695.8 |
ENSMUSP00000099219.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000101695.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000099219.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000101695](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000099219](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000115677.7 |
ENSMUSP00000111341.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000115677.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000111341.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000115677](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000111341](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000115679.7 |
ENSMUSP00000111343.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000115679.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000111343.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000115679](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000111343](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000137467.7 |
ENSMUSP00000134125.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000137467.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000134125.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000137467](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000134125](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001105197.1 |
NP_001098667.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001105197.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001098667.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001105197](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001098667](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001098667.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001271489.1 |
NP_001258418.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001271489.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001258418.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001271489](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001258418](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001258418.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001271490.1 |
NP_001258419.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001271490.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001258419.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001271490](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001258419](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001258419.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 72332.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1404 nt): ATGTCATCTTCTTCATCACGGGTCTTGCTGCGTCAGCAGCTTATGAGGGCCCAGGCTCAGGAACAGGAGA GGCGTGAGCGGCGGGAACAGGCAGCGGCCGCTCCCTTCCCCAGCCCTGCGCCCGCCTCACCAGCCATCTC TGTGATTGGCGTGTCTGCTGGTGGCCACACACTGAGTCGTCCACCTCCTGCTCAGGTGCCCAGGGAGGTA CTCAAGGTTCAGACCCACCTCGAGAACCCTACACGCTACCACCTGCAGCAAGCTCGCCGGCAGCAGGTCA AACAGTACTTGTCTACCACACTTGGGCCCAAGCTGGCTTCCCAGGCTCTCACCCCACCACCAGGGCCTTC CAGTGCCCAGCCACTTCCTGCCCCTGAAACTGCTCATGCCACCGGTCCTACAGGCAGTGCTCCTAACAGC CCCATGGCGCTGCTCACCATTGGGTCCAGCTCAGAAAAGGAGATTGATGATGTCATTGATGAGATCATCA GCCTGGAGTCCAGTTACAACGATGAGATGCTCAGCTATCTTCCAGGAGGCACTGCAGGGCTGCAGCTCCC CAGCACGCTGCCGGTGTCTGGAAATCTACTTGATGTGTACAGCAGTCAGGGAGTGGCTACCCCAGCTATC ACCGTCAGCAATTCCTGTCCAGCTGAGCTGCCTAACATCAAACGCGAGATCTCCGAAACCGAGGCAAAGG CCCTTTTGAAGGAGCGACAGAAGAAAGACAATCACAACCTAATTGAACGACGCAGGCGATTCAACATTAA CGATAGGATCAAAGAGCTGGGCACCCTCATCCCCAAGTCCAATGATCCGGAGATGCGCTGGAACAAGGGC ACCATCCTGAAGGCATCTGTGGATTACATCCGCAAATTACAGAAGGAACAGCAACGCTCCAAAGACCTGG AGAGCCGGCAGCGGTCCCTGGAACAAGCCAACCGAAGCCTGCAGCTCCGGATTCAGGAGCTAGAACTGCA GGCCCAGATCCATGGTCTGCCAGTCCCTCCCAACCCAGGACTGCTCTCCCTAACCACGAGTTCGGTCTCT GACAGCCTCAAGCCAGAACAGCTGGACATTGAGGAGGAGGGCAGGCCTAGCACAACGTTCCATGTATCGG GAGGACCTGCCCAGAACGCTCCTCCACAACAGCCTCCAGCACCACCTTCGGATGCCCTTCTGGACCTACA CTTTCCCAGCGACCACTTGGGAGACCTGGGGGACCCCTTCCACCTAGGGCTAGAGGACATTCTGATGGAG GAGGAGGGGATGGTGGGAGGACTGTCAGGGGGTGCCCTGTCCCCACTGCGGGCTGCTTCTGACCCCCTGC TTTCTTCAGTATCCCCGGCTGTTTCCAAGGCCAGCAGCCGCCGTAGCAGCTTCAGCATGGAAGAGGAGTC CTGA
Translation (467 aa): MSSSSSRVLLRQQLMRAQAQEQERRERREQAAAAPFPSPAPASPAISVIGVSAGGHTLSRPPPAQVPREV LKVQTHLENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPSSAQPLPAPETAHATGPTGSAPNS PMALLTIGSSSEKEIDDVIDEIISLESSYNDEMLSYLPGGTAGLQLPSTLPVSGNLLDVYSSQGVATPAI TVSNSCPAELPNIKREISETEAKALLKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPEMRWNKG TILKASVDYIRKLQKEQQRSKDLESRQRSLEQANRSLQLRIQELELQAQIHGLPVPPNPGLLSLTTSSVS DSLKPEQLDIEEEGRPSTTFHVSGGPAQNAPPQQPPAPPSDALLDLHFPSDHLGDLGDPFHLGLEDILME EEGMVGGLSGGALSPLRAASDPLLSSVSPAVSKASSRRSSFSMEEES
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