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Report for CCDS39362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39362.1 Public Mus musculus 5 Papolb 23 108 98 CCDS HistoryNCBI Gene:56522Re-query CCDS DB by CCDS ID:39362.1Re-query CCDS DB by GeneID:56522See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39362.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099400.2 ENSMUSP00000100595.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099400.2Link to Ensembl Protein Viewer:ENSMUSP00000100595.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099400Re-query CCDS DB by Protein ID:ENSMUSP00000100595
Original member Current member NCBI NM_019943.2 NP_064327.1 Accepted alive Link to Nucleotide Sequence:NM_019943.2Link to Protein Sequence:NP_064327.1Re-query CCDS DB by Nucleotide ID:NM_019943Re-query CCDS DB by Protein ID:NP_064327Link to BLAST:NP_064327.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064327.1 642 Q9WVP6 642 100% 0 0

Chromosomal Locations for CCDS 39362.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 142527958 142529886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGATGCCATTTGCGGTGACCACCCAAGGAGCACAACAACCGGCTCCCGCCCCGAAGCAGTTCGGCATAT
CGTCCCCCATCAGCCTGGCCGCCCCCAAGGACACAGACCGCGAACTCACCCAGAAGCTGATCGAGACCCT
CCAGCCCTTCGGGGTGTTTGAAGAGGAAGAGGAACTGCAGCGCAGGATTTTAATTTTGCAGAAATTAAAT
AATCTGGTGAAGGAATGGATCCGAGAAATCAGTGAAAGCAGGAATCTTCCACAAGCTGTAATTGAGAATG
TTGGGGGGAAAATTTTTACGTTCGGCTCTTACCGATTAGGAGTACACACGAAAGGTGCAGATATCGATGC
TTTGTGCGTTGCACCAAGACACGTGGATCGAAATGACTTTTTCACCTCCTTCTATGACAAATTGAAACTA
CAAGAGGAAGTAAAAGATTTAAGAGCTGTTGAGGAGGCCTTTGTGCCGGTTATCAAACTGTGTTTTGATG
GAATAGAGATTGATATTTTGTTTGCAAGATTAGCATTGCAGACTATTCCAGAAGATTTGGACCTACGAGA
TGATAGTCTGCTTAAAAATTTAGATATTAGGTGCATAAGAAGCCTTAACGGTTGCCGGGTAACTGATGAG
ATTTTACATCTAGTACCAAACATTGACAGCTTCAGGTTAACACTGAGAGCCATCAAATTATGGGCCAAAT
GCCACAACATCTATTCCAATATATTGGGTTTCCTTGGAGGTGTTTCCTGGGCTATGCTAGTAGCAAGAAC
TTGCCAGCTTTACCCAAATGCAATAGCATCCACTCTTGTGCGAAAATTTTTCTTGGTGTTTTCTGAGTGG
GAATGGCCAAATCCAGTGTTGTTAAAAGAACCAGAAGAACGAAATCTTAACTTGCCTGTATGGGACCCAA
GAGTGAATCCTAGTGACAGGTACCATCTTATGCCTATAATTACACCAGCATACCCACAGCAGAACTCCAC
GTACAATGTGTCTGTTTCGACCAGGATGGTCATGATTGAGGAGTTTAAACAAGGACTTGCTATCACACAT
GAAATTCTGCTGAATAAGGCAGAATGGTCCAAACTTTTTGAAGCTCCAAGCTTTTTTCAAAAATACAAGC
ATTATATTGTACTTCTGGCAAGTGCGCCAACAGAGAAACAACATTTAGAGTGGGTGGGCTTGGTGGAATC
AAAGATCCGAATCCTGGTTGGGAGCCTGGAAAAGAATGAGTTCATTACTCTGGCTCATGTGAATCCTCAG
TCGTTTCCAGCACCAAAAGAAACTGCTGACAAGGAAGAATTTCGTACTATGTGGGTGATCGGGTTAGTGT
TGAAGAAGCCAGAAAACTCTGAAATTCTCAGTATTGATCTCACCTATGATATTCAGTCTTTCACAGATAC
AGTGTACAGACAAGCAATAAATAGTAAGATGTTTGAGATGGATATGAAGATTGCTGCAATGCATCTAAGA
AGGAAGGAACTTCATCAGCTACTTCCAAATCATGTTCTTCAGAAAAAGGAAACCCATTTAACAGAAAGTG
TAAGGCTGACAGCTGTGACTGACAGCAGCCTTCTCTTGTCTATAGACAGTGAAAACAGCATGACTGCTCC
TTCACCTACTGGCACTATGAAGACAGGTCCACTGACTGGAAACCCTCAGGGCAGAAACAGTCCTGCTCTG
GCTGTTATGGCAGCATCTGTGACCAACATACAGTTTCCTGATGTTTCCTTGCAGCATGTGAATCCCATAG
AAAGCTCAGGAATTGCACTGAGTGAAAGCATCCCTCAGATTCCCTCACAACCTACCATTTCACCACCACC
TAAGCCTACAATGACCAGAGTGGTTTCTTCGACACATCTGGTAAACCATCCATCTAGACCTTCAGGAAAT
ACAGCAACGAACATACCCAATCCTATACTAGGAGTCTAG

Translation (642 aa):
MMPFAVTTQGAQQPAPAPKQFGISSPISLAAPKDTDRELTQKLIETLQPFGVFEEEEELQRRILILQKLN
NLVKEWIREISESRNLPQAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRNDFFTSFYDKLKL
QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRVTDE
ILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVRKFFLVFSEW
EWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITH
EILLNKAEWSKLFEAPSFFQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQ
SFPAPKETADKEEFRTMWVIGLVLKKPENSEILSIDLTYDIQSFTDTVYRQAINSKMFEMDMKIAAMHLR
RKELHQLLPNHVLQKKETHLTESVRLTAVTDSSLLLSIDSENSMTAPSPTGTMKTGPLTGNPQGRNSPAL
AVMAASVTNIQFPDVSLQHVNPIESSGIALSESIPQIPSQPTISPPPKPTMTRVVSSTHLVNHPSRPSGN
TATNIPNPILGV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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