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Report for CCDS19460.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19460.2 Public Mus musculus 5 Hnrnpdl 23 108 98 CCDS HistoryNCBI Gene:50926Re-query CCDS DB by CCDS ID:19460.2Re-query CCDS DB by GeneID:50926See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19460.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086900.10 ENSMUSP00000084114.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086900.10Link to Ensembl Protein Viewer:ENSMUSP00000084114.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086900Re-query CCDS DB by Protein ID:ENSMUSP00000084114
Original member Current member EBI ENSMUST00000128187.7 ENSMUSP00000121005.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128187.7Link to Ensembl Protein Viewer:ENSMUSP00000121005.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128187Re-query CCDS DB by Protein ID:ENSMUSP00000121005
Original member NCBI NM_016690.4 NP_057899.2 Updated not alive Link to Nucleotide Sequence:NM_016690.4Link to Protein Sequence:NP_057899.2Re-query CCDS DB by Nucleotide ID:NM_016690Re-query CCDS DB by Protein ID:NP_057899
Current member NCBI NM_016690.5 NP_057899.2 Accepted alive Link to Nucleotide Sequence:NM_016690.5Link to Protein Sequence:NP_057899.2Re-query CCDS DB by Nucleotide ID:NM_016690Re-query CCDS DB by Protein ID:NP_057899Link to BLAST:NP_057899.2

Chromosomal Locations for CCDS 19460.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 100036125 100036195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100036481 100036651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100036862 100036976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100037085 100037216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100037568 100037729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100037813 100037981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 100038720 100039162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGAGGTCCCGCCCCGGCTCTCCCATGTGCCGCCGCCATTGTTCCCCTCCGCTCCCGCTACTTTAGCCT
CCCGCGGCCTCTCCCATTGGCGGCCACGGGCTCCCCGGCAGCTCGCCCCGCTCCTCCCTTCGCTCGCTTC
CAGCGCCTCCCGCCAGGGGGCGCGCCGGAGCCCGCGCCACGTCACCGCCCAGCAGCCCTCCCGATTGGCG
GGCGGGGCGGCTATAAAGGGAGGGCGCAGGCGGCGGCCGGATCTCTTCCGCCGCCATTTTAAATCTAGCT
CCATACAACGCTCCGCCGCCGCTGCCGCCGGGACCCGGACTGCGCGCCAGCACCCCCTCGCCGACGGCTC
CGCCACCATGGAGGACATGAATGAGTACAGCAACATAGAGGAGTTCGCAGAGGGATCCAAGATCAACGCG
AGCAAGAACCAGCAGGATGACGGTAAAATGTTTATTGGAGGCTTGAGCTGGGATACAAGCAAGAAAGATC
TGACTGAATATTTGTCTCGATTTGGGGAAGTGGTAGACTGCACAATTAAAACAGACCCAGTCACGGGAAG
ATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTGTGGATAAGGTTTTGGAACTGAAAGAA
CACAAACTGGATGGCAAATTGATAGACCCCAAAAGGGCCAAAGCTTTAAAGGGGAAAGAACCCCCTAAAA
AGGTCTTTGTGGGTGGATTGAGCCCAGATACTTCAGAAGAACAAATTAAAGAATATTTTGGAGCCTTTGG
AGAGATAGAAAATATTGAGCTTCCCATGGATACAAAAACAAATGAAAGAAGAGGATTCTGTTTTATCACA
TACACAGACGAAGAGCCAGTAAAGAAACTGTTAGAAAGCAGATACCATCAAATAGGTTCTGGGAAGTGCG
AAATCAAAGTTGCGCAACCCAAAGAGGTGTACAGGCAGCAGCAGCAACAACAGAAAGGAGGCAGAGGGGC
TGCAGCCGGCGGAAGAGGAGGTGCTAGGGGGCGTGGAAGAGGTCAGGGCCAAAACTGGAACCAAGGATTT
AATAACTATTATGATCAAGGATATGGAAATTATAATAGTGCCTATGGTGGTGATCAGAACTATAGTGGCT
ATGGCGGCTATGATTATACTGGGTATAACTATGGGAACTATGGATATGGACAGGGATATGCAGACTACAG
CGGTCAGCAGAGCACTTACGGCAAGGCGTCCCGAGGGGGCGGCAATCACCAGAACAATTACCAGCCCTAC
TAA

Translation (420 aa):
MEVPPRLSHVPPPLFPSAPATLASRGLSHWRPRAPRQLAPLLPSLASSASRQGARRSPRHVTAQQPSRLA
GGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAAAGTRTARQHPLADGSATMEDMNEYSNIEEFAEGSKINA
SKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKE
HKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFIT
YTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGF
NNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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