NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS85429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85429.1 Public Mus musculus 7 Tial1 23 108 98 CCDS HistoryNCBI Gene:21843Re-query CCDS DB by CCDS ID:85429.1Re-query CCDS DB by GeneID:21843See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033135.8 ENSMUSP00000033135.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033135.8Link to Ensembl Protein Viewer:ENSMUSP00000033135.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033135Re-query CCDS DB by Protein ID:ENSMUSP00000033135
Original member Current member EBI ENSMUST00000165023.7 ENSMUSP00000126458.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165023.7Link to Ensembl Protein Viewer:ENSMUSP00000126458.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165023Re-query CCDS DB by Protein ID:ENSMUSP00000126458
Original member Current member NCBI NM_001347640.1 NP_001334569.1 Accepted alive Link to Nucleotide Sequence:NM_001347640.1Link to Protein Sequence:NP_001334569.1Re-query CCDS DB by Nucleotide ID:NM_001347640Re-query CCDS DB by Protein ID:NP_001334569Link to BLAST:NP_001334569.1

Chromosomal Locations for CCDS 85429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128442533 128442659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128443807 128443946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128444281 128444404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128444613 128444697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128444812 128444907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128445651 128445759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128446195 128446270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128448121 128448208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128448342 128448396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128448621 128448719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128454936 128455032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128461125 128461156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGATGGAAGACGACGGACAGCCCCGGACTCTATACGTAGGTAACCTCTCCAGAGATGTGACAGAAGTCC
TTATTCTTCAGTTATTCAGTCAGATCGGACCCTGTAAAAGCTGTAAAATGATAACAGAGCATACAAGCAA
TGACCCATATTGCTTTGTGGAATTTTATGAACACAGAGATGCAGCTGCTGCATTAGCTGCTATGAATGGG
AGAAAAATTTTGGGAAAGGAGGTCAAAGTAAACTGGGCAACAACACCAAGTAGCCAGAAAAAAGATACTT
CCAATCACTTCCATGTGTTTGTTGGGGATTTGAGTCCAGAAATTACAACAGAAGATATCAAATCAGCATT
TGCCCCCTTTGGTAAAATATCGGATGCCCGGGTAGTTAAAGACATGGCAACTGGAAAGTCCAAAGGCTAT
GGTTTTGTATCTTTTTATAACAAACTGGATGCAGAGAATGCAATTGTGCATATGGGGGGTCAGTGGTTGG
GAGGTCGACAAATCAGAACCAATTGGGCCACACGTAAACCACCTGCCCCTAAAAGTACACAAGAAACTAA
CACTAAGCAGTTGAGATTTGAAGATGTAGTAAACCAGTCAAGTCCAAAAAACTGTACTGTGTACTGTGGA
GGAATTGCTTCGGGGCTGACAGATCAACTTATGAGACAAACATTTTCACCATTTGGACAAATTATGGAAA
TACGAGTTTTTCCAGAGAAGGGCTATTCGTTTGTCAGATTTTCCACTCACGAGAGTGCGGCCCACGCCAT
TGTCTCTGTGAACGGCACTACAATCGAAGGACATGTGGTGAAATGCTATTGGGGTAAAGAATCTCCTGAT
ATGACTAAAAACTTCCAACAGGTTGACTACAGTCAGTGGGGCCAGTGGAGCCAAGTGTATGGAAACCCAC
AACAGTATGGACAGTATATGGCAAATGGGTGGCAAGTACCACCCTATGGAGTATATGGGCAGCCGTGGAA
CCAACAAGGATTTGGAGTAGATCAATCCCCTTCTGCTGCTTGGATGGGTGGATTTGGTGCTCAGCCTCCT
CAAGGACAAGCCCCTCCCCCTGTAATACCTCCTCCAAACCAAGCTGGGTATGGAATGGCAAGCTTCCCGA
CACAGTGA

Translation (375 aa):
MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG
RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY
GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCG
GIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD
MTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQPP
QGQAPPPVIPPPNQAGYGMASFPTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH