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Report for CCDS27789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27789.1 Public Mus musculus 15 Zfp641 23 108 98 CCDS HistoryNCBI Gene:239652Re-query CCDS DB by CCDS ID:27789.1Re-query CCDS DB by GeneID:239652See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169721.2 ENSMUSP00000133212.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169721.2Link to Ensembl Protein Viewer:ENSMUSP00000133212.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169721Re-query CCDS DB by Protein ID:ENSMUSP00000133212
Original member Current member NCBI NM_173769.4 NP_776130.1 Accepted alive Link to Nucleotide Sequence:NM_173769.4Link to Protein Sequence:NP_776130.1Re-query CCDS DB by Nucleotide ID:NM_173769Re-query CCDS DB by Protein ID:NP_776130Link to BLAST:NP_776130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776130.1 422 Q8BZ34-1 422 100% 0 0

Chromosomal Locations for CCDS 27789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98288472 98289220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98290478 98290591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98291171 98291300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98292886 98292977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98293620 98293803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGCTTTCGGAACAGGCTGTAGGCCTGGGCACGGGATGGGAGCCAATGAATACACAGCTGGATGCGGCAG
AACTCCAGTCAGAAAGAGGGACCCGGGAAGAGGGCTCGTGGAGAACAGCACCAAGGCCGCTGGAGCACCT
TCACTGTGGTCTTGAAGACGAGCCACTGTCCCTTCAGGAGAAGGCAACTTCTGTTCCCTGGGTTCCGGCC
GTTCCCCAGGAGGGGAACACTGGAGACTGGGAAATGGCAGCCGCACTTCTTGCAGCCGGATCCCAGGGCC
TAGTAACTATCAAGGATGTGTCCTTGTGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCGCAGAC
AGACTTTTACGGAGAATATGTCATGCAGGAAAACTGTGGGATCGTCGTCTCTCTGAGGTTTCCCATCCCC
AAATTGGACATGCTTTCTCAACAAGAGGGAGGAGAAGACCAATGGGCCCCTGACCCCCAGGATGTAGAAG
GAAGGGACATCCTGAAGGTCACATATACAGGAGACGGAGGTGAACCCCAGGGTGATACTCCTGAGCTACA
GGTGGAACCTCCCAGAACATTATCCAGTGTGACTGAAGATACTGCTCTCTGGAACCCAGGGCAGGGTCCA
AGCTGGGAGTCCATGCCCAGGAACTCCACAGGAATGCTCCTAAGCCCACGCTTCCTTCAGGAGGACACCT
TCTCTCGCCATCTACACAGAACAGACACAGACTCTCTCTTAAAACCACACACGTGCCCTCAATGTGGGAA
ACAGTTTGTGTGGGGCTCCCACCTTGCCCGACATCAGCAAACCCACACTGGAGAGAGGCCCTACAGCTGC
CTCAAGTGTGAGAAAAGCTTTGGGCGAAGGCACCACCTGATCAGGCACCAGAAAACCCATCTGCATGACA
AGCCAAGCAGGTGCTCTGAGTGCGGCAAGAGTTTCCGATGCAGCTCGCACCTGGCCAGCCACCAGAGAGT
GCACGCAGACAGCAAGTCCTGCAAGGGCCAAGACTTTGGAGAGAGTCCTGCGGCTCAGCACTGCGTGCCT
CCCGTGCCAAAGTGCCATGTGTGCACTGAATGTGGGAAGAGCTTTGGCCGGAGGCACCACCTGGTGAGAC
ACTGGCTGACCCACACCGGGGAGAAGCCCTTCCATTGCCCTCGCTGTGAGAAGAGCTTTGGCCGCAAGCA
CCACCTAGATAGGCACCTGCTGACCCACCAGGGACAGAGTCCTGGGAGCAGCTGGGACAGAAGGACAGCT
GCCTTTTGA

Translation (422 aa):
MLSEQAVGLGTGWEPMNTQLDAAELQSERGTREEGSWRTAPRPLEHLHCGLEDEPLSLQEKATSVPWVPA
VPQEGNTGDWEMAAALLAAGSQGLVTIKDVSLCFSQEEWRSLDPSQTDFYGEYVMQENCGIVVSLRFPIP
KLDMLSQQEGGEDQWAPDPQDVEGRDILKVTYTGDGGEPQGDTPELQVEPPRTLSSVTEDTALWNPGQGP
SWESMPRNSTGMLLSPRFLQEDTFSRHLHRTDTDSLLKPHTCPQCGKQFVWGSHLARHQQTHTGERPYSC
LKCEKSFGRRHHLIRHQKTHLHDKPSRCSECGKSFRCSSHLASHQRVHADSKSCKGQDFGESPAAQHCVP
PVPKCHVCTECGKSFGRRHHLVRHWLTHTGEKPFHCPRCEKSFGRKHHLDRHLLTHQGQSPGSSWDRRTA
AF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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