CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS15330.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
15330.2 |
Public |
Mus musculus |
1 |
Ptprc |
23 |
108 |
98 |
|
Public Note for CCDS 15330.1 |
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 15330.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENSMUST00000182283.7 |
ENSMUSP00000138800.1 |
Accepted |
alive |
|
|
|
NCBI |
NM_011210.4 |
NP_035340.3 |
Updated |
not alive |
|
|
|
NCBI |
NM_011210.5 |
NP_035340.3 |
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_035340.3 |
1154 |
P06800-6 |
1154 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 15330.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3465 nt): ATGACCATGGGTTTGTGGCTCAAACTTCTGGCCTTTGGATTTGCCCTTCTGGACACAGAAGTCTTTGTCA CAGGGCAAACACCTACACCCAGTGATGGTGCCAGCCTCACAACTCTTACACCATCCACTCTGGGCCTTGC AAGCACTGACCCTCCAAGCACAACCATAGCTACCACAACGAAGCAAACATGTGCTGCCATGTTTGGGAAC ATTACTGTGAATTACACCTATGAATCTAGTAATCAGACTTTTAAGGCAGACCTCAAAGATGTCCAAAATG CTAAGTGTGGAAATGAGGATTGTGAAAACGTGTTAAATAATCTAGAAGAATGCTCACAGATAAAAAACAT CAGTGTGTCTAATGACTCATGTGCTCCAGCTACAACTATAGATTTATATGTACCACCAGGGACTGACAAG TTTTCGCTACATGACTGCACACCAAAAGAAAAGGCTAATACTTCAATTTGTTTGGAGTGGAAAACAAAAA ACCTTGATTTCAGAAAATGCAACAGTGACAATATTTCATATGTACTCCACTGTGAGCCAGAAAATAATAC AAAATGCATTAGAAGAAATACATTCATACCTGAAAGATGTCAGTTGGACAACCTTCGTGCCCAAACAAAT TACACATGTGTAGCAGAAATCTTATATCGCGGTGTAAAACTCGTCAAAAATGTTATAAATGTGCAGACAG ATTTGGGGATTCCAGAAACGCCTAAGCCTAGTTGTGGGGATCCAGCTGCAAGAAAAACGTTAGTCTCTTG GCCTGAGCCTGTATCTAAACCTGAGTCTGCATCTAAACCCCATGGATATGTTTTATGCTATAAGAACAAT TCAGAAAAATGTAAAAGTTTGCCTAATAATGTGACCAGTTTTGAGGTGGAAAGCTTGAAACCTTATAAAT ACTATGAAGTGTCCCTACTTGCCTATGTCAATGGGAAGATTCAAAGAAATGGGACTGCTGAGAAGTGCAA TTTTCACACAAAAGCAGATCGTCCGGACAAGGTCAATGGAATGAAAACCTCCCGGCCGACAGACAATAGT ATAAATGTTACATGTGGTCCTCCTTATGAAACTAATGGCCCTAAAACCTTTTACATTTTGGTAGTCAGAA GTGGAGGTTCTTTTGTTACAAAATACAACAAGACAAACTGTCAGTTTTATGTAGATAATCTCTACTATTC AACTGACTATGAGTTTCTGGTCTCTTTTCACAATGGAGTGTACGAGGGAGATTCAGTTATAAGAAATGAG TCAACAAATTTTAATGCTAAAGCACTGATTATATTCCTGGTGTTTCTGATTATTGTGACATCAATAGCCT TGCTTGTTGTTTTGTATAAAATCTATGATCTGCGCAAGAAAAGATCCAGCAATTTAGATGAACAACAGGA ACTCGTTGAAAGGGATGATGAAAAGCAGCTGATGGATGTGGAGCCAATCCATTCTGACATTTTGTTGGAA ACATACAAAAGGAAGATTGCTGATGAGGGCAGACTGTTCCTGGCTGAATTTCAGAGCATTCCACGGGTAT TCAGCAAGTTTCCCATCAAAGATGCCCGAAAGCCCCACAATCAGAATAAAAACCGTTATGTTGACATTCT TCCCTATGATTATAACCGTGTGGAACTCTCTGAAATAAATGGAGATGCAGGGTCCACCTACATAAATGCC AGCTACATTGATGGCTTCAAGGAACCCAGGAAATACATTGCTGCACAAGGGCCCCGGGATGAGACAGTTG ATGACTTCTGGAGGATGATCTGGGAGCAAAAGGCCACAGTTATTGTCATGGTCACACGATGTGAAGAAGG AAACAGGAACAAGTGCGCAGAATACTGGCCAAGCATGGAGGAAGGCACTCGGGCTTTCAAAGATATTGTT GTGACAATCAATGACCACAAACGATGTCCTGATTACATCATTCAGAAGCTGAACGTTGCACATAAAAAAG AAAAAGCAACTGGAAGAGAAGTGACTCATATCCAATTCACCAGCTGGCCAGACCATGGGGTTCCTGAAGA CCCTCACCTGCTCCTCAAACTTCGACGGAGAGTTAATGCTTTTAGCAACTTCTTCAGTGGTCCCATTGTG GTGCACTGCAGTGCTGGTGTTGGGCGTACAGGTACCTACATTGGAATTGATGCCATGCTGGAAGGCCTGG AAGCAGAGGGCAAAGTGGATGTCTATGGTTATGTTGTCAAGCTAAGGCGACAGAGGTGTCTGATGGTGCA AGTGGAGGCACAGTATATCCTGATTCATCAGGCTTTAGTGGAATACAATCAGTTTGGAGAAACAGAAGTG AACTTGTCTGAGTTACATTCATGCCTACACAACATGAAGAAGAGAGATCCACCCAGTGACCCCTCCCCTC TGGAGGCTGAATACCAGAGACTTCCTTCATACAGGAGTTGGAGGACACAGCACATTGGAAATCAAGAAGA AAATAAGAAGAAGAACAGGAATTCTAATGTTGTTCCATATGACTTTAACAGAGTGCCACTTAAGCATGAA CTGGAGATGAGCAAAGAGAGTGAGCCTGAATCAGATGAGTCTTCAGATGATGACAGTGACTCAGAAGAAA CCAGCAAATACATTAATGCATCCTTTGTGATGAGTTACTGGAAACCAGAAATGATGATTGCTGCTCAGGG GCCACTAAAAGAAACGATCGGTGACTTTTGGCAGATGATATTCCAAAGAAAAGTCAAAGTTATTGTGATG TTGACAGAGTTAGTGAATGGAGACCAGGAAGTCTGTGCTCAGTACTGGGGCGAAGGAAAGCAGACTTATG GAGACATGGAAGTGGAGATGAAAGACACAAACAGAGCCTCAGCCTACACTCTCCGAACTTTTGAGCTGAG ACATTCCAAGAGGAAGGAGCCCAGAACTGTGTACCAGTACCAGTGTACCACATGGAAAGGGGAAGAGCTG CCTGCAGAACCCAAAGACCTGGTGTCTATGATTCAGGACCTCAAACAGAAGCTTCCCAAGGCTTCCCCAG AAGGGATGAAGTATCACAAGCATGCATCCATCCTCGTCCACTGCAGAGATGGATCCCAGCAGACAGGGTT GTTCTGTGCCTTGTTCAATCTCTTGGAAAGTGCAGAAACAGAAGATGTGGTTGATGTTTTCCAAGTGGTA AAGTCTCTACGCAAAGCACGGCCTGGGGTGGTGTGCAGCTATGAGCAATACCAGTTCCTCTATGACATCA TCGCCAGCATCTATCCCGCCCAGAATGGACAAGTCAAGAAAACAAACAGCCAAGACAAAATTGAATTTCA TAATGAAGTGGATGGAGGCAAGCAGGATGCTAACTGTGTCCGTCCAGATGGTCCTCTGAATAAAGCCCAG GAAGACAGCAGAGGGGTGGGAACCCCGGAGCCTACCAATAGTGCTGAGGAACCAGAACATGCTGCCAATG GTTCTGCGAGCCCAGCTCCAACCCAGAGTTCATAG
Translation (1154 aa): MTMGLWLKLLAFGFALLDTEVFVTGQTPTPSDGASLTTLTPSTLGLASTDPPSTTIATTTKQTCAAMFGN ITVNYTYESSNQTFKADLKDVQNAKCGNEDCENVLNNLEECSQIKNISVSNDSCAPATTIDLYVPPGTDK FSLHDCTPKEKANTSICLEWKTKNLDFRKCNSDNISYVLHCEPENNTKCIRRNTFIPERCQLDNLRAQTN YTCVAEILYRGVKLVKNVINVQTDLGIPETPKPSCGDPAARKTLVSWPEPVSKPESASKPHGYVLCYKNN SEKCKSLPNNVTSFEVESLKPYKYYEVSLLAYVNGKIQRNGTAEKCNFHTKADRPDKVNGMKTSRPTDNS INVTCGPPYETNGPKTFYILVVRSGGSFVTKYNKTNCQFYVDNLYYSTDYEFLVSFHNGVYEGDSVIRNE STNFNAKALIIFLVFLIIVTSIALLVVLYKIYDLRKKRSSNLDEQQELVERDDEKQLMDVEPIHSDILLE TYKRKIADEGRLFLAEFQSIPRVFSKFPIKDARKPHNQNKNRYVDILPYDYNRVELSEINGDAGSTYINA SYIDGFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPSMEEGTRAFKDIV VTINDHKRCPDYIIQKLNVAHKKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFFSGPIV VHCSAGVGRTGTYIGIDAMLEGLEAEGKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEYNQFGETEV NLSELHSCLHNMKKRDPPSDPSPLEAEYQRLPSYRSWRTQHIGNQEENKKKNRNSNVVPYDFNRVPLKHE LEMSKESEPESDESSDDDSDSEETSKYINASFVMSYWKPEMMIAAQGPLKETIGDFWQMIFQRKVKVIVM LTELVNGDQEVCAQYWGEGKQTYGDMEVEMKDTNRASAYTLRTFELRHSKRKEPRTVYQYQCTTWKGEEL PAEPKDLVSMIQDLKQKLPKASPEGMKYHKHASILVHCRDGSQQTGLFCALFNLLESAETEDVVDVFQVV KSLRKARPGVVCSYEQYQFLYDIIASIYPAQNGQVKKTNSQDKIEFHNEVDGGKQDANCVRPDGPLNKAQ EDSRGVGTPEPTNSAEEPEHAANGSASPAPTQSS
|