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Report for CCDS80320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80320.1 Public Mus musculus 5 Csn1s2b 23 108 98 CCDS HistoryNCBI Gene:12992Re-query CCDS DB by CCDS ID:80320.1Re-query CCDS DB by GeneID:12992See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197301.1 ENSMUSP00000142449.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197301.1Link to Ensembl Protein Viewer:ENSMUSP00000142449.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197301Re-query CCDS DB by Protein ID:ENSMUSP00000142449
Original member Current member NCBI NM_001301335.1 NP_001288264.1 Accepted alive Link to Nucleotide Sequence:NM_001301335.1Link to Protein Sequence:NP_001288264.1Re-query CCDS DB by Nucleotide ID:NM_001301335Re-query CCDS DB by Protein ID:NP_001288264Link to BLAST:NP_001288264.1

Chromosomal Locations for CCDS 80320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87809909 87809959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87813088 87813114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87813838 87813861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87813941 87813982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87816641 87816664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87818943 87818966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87819066 87819110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87820951 87820995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87822212 87822322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87824139 87824144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGAAGTTCATCATTCTTACTTGCCTTTTGGCCGTTGCTCTTGCAAAGCAGAGGATGGAGCAATACATCT
CCAGTGAGGAGTCCATGGATAACTCTCAAGAAAACTTTAAGCAGAATATGGATGTGGCCTTTTTTCCCAG
TCAGGAATCTGTTGAAGCTCCCATGAAGGTATCTGACATCATTTCTCAGCAACAATACAACCAGAAAATG
ATGGACATGAGTGTGAGTGCCAGAGAGAAAACTGTGATGACTGAAGAAAGTAAGAACATCCAAGACTACA
TGAACAAAATGAAACGATACAGCAAGATCACCTGGCCACAGTTTGTAAAGCTTCTCCATCAATACCAGAA
AACCATGACCCCGTGGAGCTATTACCCATCTACCCCCAGCCAGGTTTGA

Translation (132 aa):
MKFIILTCLLAVALAKQRMEQYISSEESMDNSQENFKQNMDVAFFPSQESVEAPMKVSDIISQQQYNQKM
MDMSVSAREKTVMTEESKNIQDYMNKMKRYSKITWPQFVKLLHQYQKTMTPWSYYPSTPSQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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