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Report for CCDS22863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22863.1 Public Mus musculus 9 Or7e165 23 108 98 CCDS HistoryNCBI Gene:18358Re-query CCDS DB by CCDS ID:22863.1Re-query CCDS DB by GeneID:18358See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22863.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000215112.2 ENSMUSP00000150309.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215112.2Link to Ensembl Protein Viewer:ENSMUSP00000150309.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000215112Re-query CCDS DB by Protein ID:ENSMUSP00000150309
Original member Current member NCBI NM_011001.2 NP_035131.1 Accepted alive Link to Nucleotide Sequence:NM_011001.2Link to Protein Sequence:NP_035131.1Re-query CCDS DB by Nucleotide ID:NM_011001Re-query CCDS DB by Protein ID:NP_035131Link to BLAST:NP_035131.1

Chromosomal Locations for CCDS 22863.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 19783135 19784064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGAACCATATAATTTAACAGGAACCTTGGAATTCATTCTCCTTGGACTCTCAGAGGACCCTGAACTGC
AGCTCATCTTATTTGCACTATTCCTGCTCATATACCTGCTCACTATGCTTGGAAATGTTCTCATCATCTT
GGCCATCAGCTGTGATTCCCACCTCCACAGCCCAATGTACTTCTTCCTCTACAACCTTTCATTGTCTGAC
ATGGGCTTTAGCAGCACCACAATCCCCAAAATGCTGATAAACTTGCATGCACATAAGAGATCCACAACAT
ATGCTGAATGCCTAACTCAGGTATCTTTCTTTATTCTTTTTGGGTGTATGGACAGCTTTCTACTGGCAGT
GATGGCATATGACCGATGGGTGGCCATTTGTCACCCTCTACACTACCAAGTCATTCTGAATCCTTGTCGG
TGTAGATATTTGGTTGTAATGTCATTTTGTATCAGTCTCATTGATTCACAGGTGCACTGCTTTATGGTGT
CACAACTAACATTTTGTACTAATATAGAAATCCCTCATTTCTTCTGTGATGTTCCAGAACTTGTAAAACT
TGCTTGTTCTAACACTACTATCAATGACATAGCCATGTTTCTTTCAAGCATCATTGTTGGATTCCTCCCT
GCCTCAGGAATATTTTACTCCTACTATAAAATTACTTCTTCTATTTTTAGAGTTCCATCACTGTTAGGGA
AATATAAAGCCTTCTCTACCTGTGGATCTCACCTGTCAGTTGTTTGCCTATTTTATGGAACAGGTATAGG
AGTTTACCTCAGTTCCACAGTTTCTGGTTCTTCCAGGGAAAGTATGGTAGCTTCGGTAATGTATACAATG
GTGGTTCCTATGATGAACCCCTTCATTTACAGCCTGAGGAACAGGGACATCAAGAAAGCCCTCTGGAAAA
TTGTCTGTAAGATAACATAA

Translation (309 aa):
MEPYNLTGTLEFILLGLSEDPELQLILFALFLLIYLLTMLGNVLIILAISCDSHLHSPMYFFLYNLSLSD
MGFSSTTIPKMLINLHAHKRSTTYAECLTQVSFFILFGCMDSFLLAVMAYDRWVAICHPLHYQVILNPCR
CRYLVVMSFCISLIDSQVHCFMVSQLTFCTNIEIPHFFCDVPELVKLACSNTTINDIAMFLSSIIVGFLP
ASGIFYSYYKITSSIFRVPSLLGKYKAFSTCGSHLSVVCLFYGTGIGVYLSSTVSGSSRESMVASVMYTM
VVPMMNPFIYSLRNRDIKKALWKIVCKIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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