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Report for CCDS88014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88014.1 Public Mus musculus 10 Herc4 23 108 98 CCDS HistoryNCBI Gene:67345Re-query CCDS DB by CCDS ID:88014.1Re-query CCDS DB by GeneID:67345See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88014.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000219577.1 ENSMUSP00000151886.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219577.1Link to Ensembl Protein Viewer:ENSMUSP00000151886.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219577Re-query CCDS DB by Protein ID:ENSMUSP00000151886
Original member NCBI NM_030114.2 NP_084390.1 Updated not alive Link to Nucleotide Sequence:NM_030114.2Link to Protein Sequence:NP_084390.1Re-query CCDS DB by Nucleotide ID:NM_030114Re-query CCDS DB by Protein ID:NP_084390
Current member NCBI NM_030114.3 NP_084390.1 Accepted alive Link to Nucleotide Sequence:NM_030114.3Link to Protein Sequence:NP_084390.1Re-query CCDS DB by Nucleotide ID:NM_030114Re-query CCDS DB by Protein ID:NP_084390Link to BLAST:NP_084390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084390.1 1057 Q6PAV2-1 1057 100% 0 0

Chromosomal Locations for CCDS 88014.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 63245900 63246125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63264026 63264185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63269628 63269704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63273451 63273672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63274997 63275088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63278335 63278465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63283181 63283341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63285652 63285728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63286017 63286141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63287519 63287578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63287898 63288009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63289052 63289241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63290504 63290676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63299120 63299239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63303845 63303868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63306348 63306446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63307742 63307909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63308307 63308450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63311467 63311633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63311848 63311914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63314487 63314569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63315660 63315843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63316700 63316802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63317280 63317488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3174 nt):
ATGTTGTGCTGGGGCAATGCATCCTATGGACAACTAGGTTTGGGAGGAATTGATGAAGAAATTGTACTAG
AGCCCAGGAGAAGTGACTTTTTCGTGAACAAAAAGGTCCGAGATGTAGGCTGTGGACTCAGGCACACTGT
GTTTGTCCTGGATGATGGGACTGTGTACACATGTGGATGTAATGATCTAGGACAGCTAGGTCATGAAAAG
TCCAGAAAGAAACCAGAGCAGGTTGTTGCCCTGGATGCCCAGAATATCGTAGCTGTTGCGTGTGGAGAAG
CTCACACGTTAGCGCTGAATGACAAGGGCCAGGTGTATGCTTGGGGTCTCGACTCTGACGGACAGCTTGG
CCTACAGGGATCAGAGGAATGTATCAGAGTACCCAGAAATATTAAAAGTCTTTCGGATATCCAGATAGTA
CAGGTTGCGTGTGGTTACTATCATTCGCTTGCACTTTCTAAAGCAAGTGAAGTTTTCTGTTGGGGACAGA
ATAAATATGGCCAGCTGGGTCTAGGCATTGATTGTCAAAAGCAAACTTCACCACAGCTGATTAAGTCTTT
GCTTGGAATACCATTCATGCAAGTCGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCCGGAGCT
ATCTTTGGATGGGGACGTAACAAATTTGGTCAGCTAGGTCTTAATGATGAAAATGATAGGTATGTTCCTA
ATTTACTAAAGTCACTAAGATCTCAGAAAATAGTTTATATTTGTTGCGGAGAAGATCATACTGCTGCATT
AACCAAGGAAGGTGGAGTGTTTACCTTTGGAGCTGGGGGCTATGGCCAGCTGGGTCATAATTCTACCAGT
CATGAGATAAATCCCAGGAAAGTTTTTGAACTCATGGGAAGCATTGTTACTCAGGTCGCTTGTGGAAGGC
AGCATACCTCTGCATTTGTTCCTTCTTCAGGACGAATTTACTCCTTTGGTCTTGGTGGTAATGGGCAGTT
GGGAACTGGTTCAACCAGCAACAGAAAAAGCCCTTTCACTGTAAAAGGAAACTGGTTTTCTTATAATGGA
CAGTGTCCACAAGATATTGGTTCTGAAGACTATTTCTGTGTCAAAAGAATTTTCTCAGGTGGAGATCAAA
GCTTTTCACATTACTCTAGTCCTCAGAACTGTGGACCTCCAGATGACTTTAGATGCTCCGACCCTTCCAA
GCAGATCTGGACAGTGAACGAAGCTCTGATTCAGAAATGGCTCAGCTACCCCTCTGGAAGGTTCCCTGTG
GAGATAGCCAATGAGATAGATGGAACATTTTCTTCATCTGGCTGCCTAAATGGAAGTTTTCTGGCTATTA
GCAATGACGATCACTATAGAACAGGTACCAGATTTTCAGGGGTTGATATGAACGCTGCTAGACTCTTATT
CCACAAACTTATACAACCTGATCATCCTCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAATCTA
ATCCCTAAACTGACTAGTTCCCTACCTGATGTTGAAGCTCTGAGGTTTTATCTTACCCTGCCAGAGTGTC
CCCTGATGAGTGACTGCAACAATTTCACAACAATAGCAATCCCCTTTGGTACAGCTCTTGTGAACCTAGA
AAAGGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGATAGTA
GAACTTTTTAAGGAAGTTGTGGTACATCTTTTGAAACTCTACAAGATCGGCATTCCCCCTTCTGAAAGAA
GAATTTTCAACAGTTTTCTTCATACCGCATTAAAGGTTTTAGAAATATTGCATAGGGTAAATGAGAAAAC
AGGACAACTTATTCAATATGACAAGTTTTACATCCATGAAGTCCAAGAGCTGATAGACATAAGGAATGAC
TATATCAACTGGGTCCAGCAGCAAGCCTATGGAGTGGATGTCAGCCATGGAGTAACTGAGTTGGCAGATA
TCCCGGTGACAATTTGTACATATCCATTTGTATTTGATGCCCAGGCAAAAACTACTCTGCTCCAGACAGA
TGCAGTCTTGCAGATGCAGATGGCCATTGACCAGGCCCACAGGCAGAATGTCTCCTCTCTTTTTCTCCCA
GTGATCGAGTCTGTGAATCCTTGCTTAATTCTAGTTGTTCGCAGAGAGAATATTGTAGGAGATGCGATGG
AAGTCCTCAGGAAAACCAAGAATATAGATTATAAAAAGCCACTCAAGGTTATATTTGTTGGAGAAGATGC
TGTTGATGCAGGAGGTGTTCGCAAAGAATTTTTCTTGCTTATCATGAGGGAATTGTTGGATCCTAAATAC
GGCATGTTTCGATATTATGAAGATTCCAGGCTCATTTGGTTTTCAGATAAGACATTTGAAGACAGTGATT
TGTTCCACTTGATCGGTGTTATCTGTGGATTAGCAATTTATAATTTTACCATTGTGGACCTCCATTTCCC
TTTGGCTTTATATAAGAAACTGCTGAAAAGGAAGCCGTCCCTGGATGATCTGAAAGAGCTGATGCCAGCC
GTCGGGAGAAGCATGCAGCAATTGCTGGACTATCCAGAAGATGACATAGAGGAAACATTTTGTCTAAACT
TTACGATCACAGTTGAGAACTTCGGTGCAACAGAAGTAAAAGAGCTGGTTCTGAACGGGGCAGACACTGC
TGTTAATAGACAGAATCGGCAGGAGTTTGTTGATGCCTATGTGGATTACATATTCAATAAATCAGTGGCA
TCTTTATTTGATGCTTTCCATGCGGGCTTTCATAAGGTCTGTGGAGGAAAAGTTCTTCTGCTCTTCCAGC
CTAATGAATTACAAGCTATGGTTATTGGGAATACAAATTATGATTGGAAAGAACTGGAGAAGAATACAGA
ATACAAAGGAGAGTATTGGGCAGACCATCCCACGATAAAAATTTTTTGGGAAGTGTTTCATGAATTACCA
CTAGAGAAGAAGAAACAATTTCTATTATTTTTGACAGGTAGTGATCGGATTCCCATTCTTGGTATGAAGA
GTCTGAAACTAGTCATCCAGTCAACAGGAGGTGGTGAGAGCTATCTCCCGGTTTCCCATACCTGTTTTAA
TCTTCTAGATCTCCCAAAATATACAGAGAAAGAAACCCTCCGATGTAAACTGATCCAAGCTATTGATCAC
AATGAAGGCTTCAGTTTAATATGA

Translation (1057 aa):
MLCWGNASYGQLGLGGIDEEIVLEPRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEK
SRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSLSDIQIV
QVACGYYHSLALSKASEVFCWGQNKYGQLGLGIDCQKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGA
IFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTS
HEINPRKVFELMGSIVTQVACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWFSYNG
QCPQDIGSEDYFCVKRIFSGGDQSFSHYSSPQNCGPPDDFRCSDPSKQIWTVNEALIQKWLSYPSGRFPV
EIANEIDGTFSSSGCLNGSFLAISNDDHYRTGTRFSGVDMNAARLLFHKLIQPDHPQISQQVAASLEKNL
IPKLTSSLPDVEALRFYLTLPECPLMSDCNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIV
ELFKEVVVHLLKLYKIGIPPSERRIFNSFLHTALKVLEILHRVNEKTGQLIQYDKFYIHEVQELIDIRND
YINWVQQQAYGVDVSHGVTELADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLP
VIESVNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKY
GMFRYYEDSRLIWFSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPA
VGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNRQNRQEFVDAYVDYIFNKSVA
SLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWADHPTIKIFWEVFHELP
LEKKKQFLLFLTGSDRIPILGMKSLKLVIQSTGGGESYLPVSHTCFNLLDLPKYTEKETLRCKLIQAIDH
NEGFSLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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