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Report for CCDS89144.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89144.1 Public Mus musculus 17 Emilin2 23 108 98 CCDS HistoryNCBI Gene:246707Re-query CCDS DB by CCDS ID:89144.1Re-query CCDS DB by GeneID:246707See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89144.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000233245.1 ENSMUSP00000156676.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233245.1Link to Ensembl Protein Viewer:ENSMUSP00000156676.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233245Re-query CCDS DB by Protein ID:ENSMUSP00000156676
Original member NCBI NM_001357336.1 NP_001344265.1 Updated not alive Link to Nucleotide Sequence:NM_001357336.1Link to Protein Sequence:NP_001344265.1Re-query CCDS DB by Nucleotide ID:NM_001357336Re-query CCDS DB by Protein ID:NP_001344265
Current member NCBI NM_001357336.2 NP_001344265.1 Accepted alive Link to Nucleotide Sequence:NM_001357336.2Link to Protein Sequence:NP_001344265.1Re-query CCDS DB by Nucleotide ID:NM_001357336Re-query CCDS DB by Protein ID:NP_001344265Link to BLAST:NP_001344265.1

Chromosomal Locations for CCDS 89144.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 71252756 71253093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71255119 71255247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71255980 71256012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71256324 71256692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71273374 71275287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71280674 71280849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 71310149 71310171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2982 nt):
ATGCCCTGTCCATCCGCCCTGGTGTATCGGGTAAACTTTAGACCCAGATTTGTCACTAGATACAAGATAG
TGACACAGTTGGAATGGAGATGCTGTCCTGGCTTTAGAGGACCAGACTGCCAAGAAGGTCCCAAAGACCA
CATGAAGACCCCCCGGCCCCCATCAGCTCGACCAAAAAACAACCTGAAGAAAGCCACAGATACAGATCCA
AGCCAAGTTTCTCAGCCTAAGAAAACGTTGTCCCCAACAAATGCAGTGGAACCAGGTCAGGTTGCAGATG
CAAAGCAAGGCCCTCCGGAACTTCAGCAATCCAAAGTCCAGGTGCTGGAGGAGAAGGTCGTCCGACTCAC
CAGGATGGTGCTGGATCTCCAGTCCACCGTGGTAGGCCTGAAGGAGAACCTCAAACACACCATTCAAGAT
GATGGCAGAAAAGAGCCAGACTCCTGGCTCGGTCCCCTGCACCCACAGCCAACGCCTGACAGCCCCCTTG
CGGGGGACGCAGAGCCGAGCCAGCTTCCCGGAATCCCCAGCAGCAAGGAATCTGGTATGAAGGACATCAA
GTCTGAGTTGGCTGAGGTCAAAGACACACTGAAGACCAAGAGTGACAAGCTAGAAGAGCTGGACGGGAAG
GTGAAGGGCTATGAAGGACAGCTCAAGCAGCTGCAGGAGGCGGCTCAGGGTCCCACGGTCACCATGACAA
CCAATGAGCTGTACCAAGCCTATGTGGATAGCAAGATCGATGCCCTGAGGGAGGAGCTCATGGAAGGCAT
GGACCGGAAGCTGGCTGACCTGAAGAATACGTGCGAGTACAAGCTGGTGGGGCTCCAGCAGCAGTGTGAT
GACTACGGCAGCAGCTACCTCGGAGTGATAGAGCTGATCGGGGAGAAGGAGGCGAGCCTGAAAAAAGACA
TTGCTGACCTGCGAGCCCAGCTGCAGGATCCTGTAGCCCAACCAAGCTGTTGCAATGGTCAAAAGAGCAG
CGATTTCGGCCCACAGATCAAGGCGCTAGACCAGAAAATCGAGAGAGTTGCCGAGGCCACCAGGATGCTG
AATGGACGGCTGGACAATGAGTTCGACCGCCTCTCCGTTCCAGAGCCAGACGCAGACTTTGATGCGAGAT
GGACCGAGCTCGACGCAAGGATCAATGTGACGGAGAAGAACGCAGAGGAGCATTGCTTTTACATTGAGGA
GACCCTGCGGGGGACCATCAACGGCGAAGTGGATGACTTGAGGAAGCTTCTGAATGAGAAGATCCACTCC
CTGGAAGACCGTCTGGGAATTGTTCTGCAAGCGGCTAACAGCTCAGACGTGGAGTTGACACCCATGGGCC
CAGCCTTGCCAGAGCAGCCAGGGGCAGAGAATGAGCAGGTCCTAATGGAGTTGAGCCGCCTGAAGGACAA
AGTTCAAGTGGTTGAGGACTTCTGCCTGCAGAGCTTGCCCCACGGGATAGATGGAGCTTTGCCTAGTGTA
GAGGACCTCACGCATGTCAGCCTGAGCCTTTTAGAATCCCTCAATGATACGATGCACAGGCAGTTCCAAG
AAACGAGTCACAGCATCCAGAAACTCCAAGAGGACGTCAATGCCCTCCATTCTCAACTGAATCACTCCGA
ATGTACGGGGACTTACTTGCAGAACGGAGTGAGCGACAGCCGAACAGGTGACAGCATGGAAGCAAGTGGG
TTTACTAAGACAGGGGAGCAAGAGAGGACAGTGGGGACTGTCCCGTCTCCTGGGACCCCCGCGGCTCCAT
GCTGTGGTCAGCTGGAGGAGCGCTGGCAGAAGCTGCAGAACCAAATGTTGGCTGAGCTAGACACGTGTAA
GGAGAGTGCTCACGGGGTTCAGAGTGGGGTGTCTGCGATCGAGGGCAGGGTGTTCCAGCTGGAGCAGACA
TGCAGAAGGCTGGATACCATCTCAGGGAGTCTGCAGAGGATCAAGGAGGGGCTCGGTAAGCATGTGGGCA
GCTTGTGGAACTGCATCCGGCAGATGAACGGGACGCTCAAATCGCACTCCAGAGACATCTCTGGCCTCAA
GAATTCTGTGCAGCAATTCTATAGCCATGTTTTCCAGATTTCTACCGACTTGCAAGATCTGGTCAAGTTT
CAGCCATCAGCAACAGAGGAACCCTCAGAAGCAACCGAGGGACCGTCTGGGAAGACTCCCCTAGAATCCA
CCAGACCTTCAGAGGAGGCCCCCACTGAACCACCCCGGCTGACCCCACTGCCAGAAGACCCTGCAGGACC
ACCACAGACAGGCCAGCAGCCAGTATTGCCCCAGAGGCCCCTGCAGCCACCACCTTTGCCTGCCTGGCCT
GGTCGCACGGGGTTGCCCTTCTTGCCTGGCTCTAGTGGCGTCATCATGGAGACTGGAGAGGCGGGGCCTC
CAGGCAGGATGGGCGTGTCCGGAAGGGGCCTGCCTCGGGGAGTGGATGGCCAGATGGGGCAGGGGCCCAT
TCATAGCTCGGAAGGCTATGCAGGGGCACCAGGCTACCCCAAGTCACCTCCTGTAACCACCCCAGGGGTG
CCGCTGCCCACTCTGGTGTCCTTTTCAGCCGGTCTTACCCAGAAGCCTTTTCCCAGCGATGGAGGCGTTG
TTCTCTTCAATAAGGTGCTGGTGAACGATGGGGATGTATACAACCCCAACACTGGGATCTTCACCGCACC
ATACGACGGGCGCTACTTGATCACAGCCACCCTCACCCCTGAGAGAGACACCTATGTGGAAGCCGTCCTG
TCTGTCTCCAACGCCAGTGTTGCCCAGCTGCACACGGCTGGGTACAGGAGAGAGTTCCTGGAATACCATC
GTCCCCCTGGGGCTGTGCATACCTGTGGGGGCCCGGGGGCCTTCCACCTCATTGTGCACTTGAAGGCAGG
AGATGGAGTCAATGTTGTGGTGACTGGGGGCAGACTGGCTCACACAGACTTTGATGAAATGTACTCCACC
TTCAGTGGTGTTTTCTTGTACCCTTTCCTTTCTCACCTCTAG

Translation (993 aa):
MPCPSALVYRVNFRPRFVTRYKIVTQLEWRCCPGFRGPDCQEGPKDHMKTPRPPSARPKNNLKKATDTDP
SQVSQPKKTLSPTNAVEPGQVADAKQGPPELQQSKVQVLEEKVVRLTRMVLDLQSTVVGLKENLKHTIQD
DGRKEPDSWLGPLHPQPTPDSPLAGDAEPSQLPGIPSSKESGMKDIKSELAEVKDTLKTKSDKLEELDGK
VKGYEGQLKQLQEAAQGPTVTMTTNELYQAYVDSKIDALREELMEGMDRKLADLKNTCEYKLVGLQQQCD
DYGSSYLGVIELIGEKEASLKKDIADLRAQLQDPVAQPSCCNGQKSSDFGPQIKALDQKIERVAEATRML
NGRLDNEFDRLSVPEPDADFDARWTELDARINVTEKNAEEHCFYIEETLRGTINGEVDDLRKLLNEKIHS
LEDRLGIVLQAANSSDVELTPMGPALPEQPGAENEQVLMELSRLKDKVQVVEDFCLQSLPHGIDGALPSV
EDLTHVSLSLLESLNDTMHRQFQETSHSIQKLQEDVNALHSQLNHSECTGTYLQNGVSDSRTGDSMEASG
FTKTGEQERTVGTVPSPGTPAAPCCGQLEERWQKLQNQMLAELDTCKESAHGVQSGVSAIEGRVFQLEQT
CRRLDTISGSLQRIKEGLGKHVGSLWNCIRQMNGTLKSHSRDISGLKNSVQQFYSHVFQISTDLQDLVKF
QPSATEEPSEATEGPSGKTPLESTRPSEEAPTEPPRLTPLPEDPAGPPQTGQQPVLPQRPLQPPPLPAWP
GRTGLPFLPGSSGVIMETGEAGPPGRMGVSGRGLPRGVDGQMGQGPIHSSEGYAGAPGYPKSPPVTTPGV
PLPTLVSFSAGLTQKPFPSDGGVVLFNKVLVNDGDVYNPNTGIFTAPYDGRYLITATLTPERDTYVEAVL
SVSNASVAQLHTAGYRREFLEYHRPPGAVHTCGGPGAFHLIVHLKAGDGVNVVVTGGRLAHTDFDEMYST
FSGVFLYPFLSHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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