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Report for CCDS26164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26164.1 Public Mus musculus 12 Slc25a29 23 108 98 CCDS HistoryNCBI Gene:214663Re-query CCDS DB by CCDS ID:26164.1Re-query CCDS DB by GeneID:214663See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021693.3 ENSMUSP00000021693.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021693.3Link to Ensembl Protein Viewer:ENSMUSP00000021693.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021693Re-query CCDS DB by Protein ID:ENSMUSP00000021693
Original member Current member NCBI NM_181328.3 NP_851845.1 Accepted alive Link to Nucleotide Sequence:NM_181328.3Link to Protein Sequence:NP_851845.1Re-query CCDS DB by Nucleotide ID:NM_181328Re-query CCDS DB by Protein ID:NP_851845Link to BLAST:NP_851845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851845.1 306 Q8BL03 306 100% 0 0

Chromosomal Locations for CCDS 26164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 108826730 108827488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108827674 108827757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108831197 108831240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 108835652 108835685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGCGCTCGACTTCCTGGCTGGATGCGCCGGAGGTGTGGCAGGTGTGATCGTGGGACACCCTTTTGACA
TAGTCAAGGTGCGGCTGCAAGTTCAGAGCACAGAGAAGCCTCAGTACAGAGGGACGCTGCACTGCTTCCA
GTCCATCATCAAGCAGGAGAGTGTGCTGGGCCTGTATAAAGGCCTGGGCTCGCCACTAATGGGACTCACC
TTCATCAATGCACTGGTGTTTGGGGTGCAAGGTAACACCCTCCGGGCCCTGGGCCAAGACTCACCACTCA
ATCAGTTCCTGGCCGGTGCAGCAGCAGGCGCCATTCAGTGTGTCATCTGCTGCCCCATGGAACTGGCCAA
GACGAGGCTGCAGCTCCAGGCCGTGGGTCCTGCCCGTACCTACAAGGGCTCCCTGGACTGCCTGGTGCAG
ATTTACCGGCATGAGGGCCTGCGCGGCATCAATCGAGGCATGGTGTCCACACTTCTGCGGGAGACGCCAA
GCTTTGGCGTCTACTTCCTCACCTATGATGTAATGACCCGCGCCATGGGCTGCGAGCCAGGTGACCGCCT
GCTGGTGCCTAAGCTGCTGCTGGCGGGTGGCACGTCGGGGATCACATCCTGGCTCTCCACTTATCCCATG
GACGTGGTTAAGTCACGACTGCAAGCCGACGGGCTACAAGGAACCCCTCGCTACCGCGGCATCGTCGACT
GCATGCGGCAGAGCTACCAGGCCGAGGGCTGGCAAGTCTTCACGCGAGGGCTGGCCTCCACGCTGCTCCG
TGCCTTCCCGGTCAATGCTGCCACCTTTGCCACAGTCACTGTGGTGCTTACATATACCCGGGGCGAGGAG
GCTCAGGTAGACAGTGAGGCAGCTCTGGGCACCTCTCCCACTCCTGCTGGGTCTGCCCTGGCCCAGCCTT
CCAGTCTGTGA

Translation (306 aa):
MALDFLAGCAGGVAGVIVGHPFDIVKVRLQVQSTEKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLT
FINALVFGVQGNTLRALGQDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQAVGPARTYKGSLDCLVQ
IYRHEGLRGINRGMVSTLLRETPSFGVYFLTYDVMTRAMGCEPGDRLLVPKLLLAGGTSGITSWLSTYPM
DVVKSRLQADGLQGTPRYRGIVDCMRQSYQAEGWQVFTRGLASTLLRAFPVNAATFATVTVVLTYTRGEE
AQVDSEAALGTSPTPAGSALAQPSSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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