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Report for CCDS27993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27993.1 Public Mus musculus 16 Ppil2 23 108 98 CCDS HistoryNCBI Gene:66053Re-query CCDS DB by CCDS ID:27993.1Re-query CCDS DB by GeneID:66053See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27993.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023455.13 ENSMUSP00000023455.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023455.13Link to Ensembl Protein Viewer:ENSMUSP00000023455.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023455Re-query CCDS DB by Protein ID:ENSMUSP00000023455
Original member Current member EBI ENSMUST00000164458.9 ENSMUSP00000131422.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164458.9Link to Ensembl Protein Viewer:ENSMUSP00000131422.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164458Re-query CCDS DB by Protein ID:ENSMUSP00000131422
Original member Current member EBI ENSMUST00000231712.1 ENSMUSP00000155861.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231712.1Link to Ensembl Protein Viewer:ENSMUSP00000155861.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231712Re-query CCDS DB by Protein ID:ENSMUSP00000155861
Original member Current member NCBI NM_001252444.1 NP_001239373.1 Accepted alive Link to Nucleotide Sequence:NM_001252444.1Link to Protein Sequence:NP_001239373.1Re-query CCDS DB by Nucleotide ID:NM_001252444Re-query CCDS DB by Protein ID:NP_001239373Link to BLAST:NP_001239373.1
Original member Current member NCBI NM_001252445.1 NP_001239374.1 Accepted alive Link to Nucleotide Sequence:NM_001252445.1Link to Protein Sequence:NP_001239374.1Re-query CCDS DB by Nucleotide ID:NM_001252445Re-query CCDS DB by Protein ID:NP_001239374Link to BLAST:NP_001239374.1
Original member Current member NCBI NM_144954.3 NP_659203.1 Accepted alive Link to Nucleotide Sequence:NM_144954.3Link to Protein Sequence:NP_659203.1Re-query CCDS DB by Nucleotide ID:NM_144954Re-query CCDS DB by Protein ID:NP_659203Link to BLAST:NP_659203.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239373.1 521 Q9D787 521 100% 0 0
NP_001239374.1 521 Q9D787 521 100% 0 0
NP_659203.1 521 Q9D787 521 100% 0 0

Chromosomal Locations for CCDS 27993.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17088770 17088866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17089145 17089281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17089428 17089490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17089581 17089653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17090102 17090158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17091175 17091292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17091856 17091889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17092215 17092304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17092685 17092791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17093011 17093086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17094883 17095043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17096005 17096080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17096705 17096794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17097356 17097447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17100256 17100307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17103576 17103627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17105993 17106055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17107179 17107224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17109645 17109694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17111143 17111174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGGGAAGCGACAGCACCAGAAGGACAAGATGTATATCACTTGTGCTGAGTACACTCATTTCTATGGTG
GCAGGAAGCCAGATATCTCACAGACAAGTTTTCGCCGCTTACCTTTTGACCACTGCAGTCTCTCTCTCCA
GCCTTTTGTCTACCCAGTCTGCACCCCAGAAGGTGTCGTCTTTGACTTGCTGAACATTGTTCCCTGGCTT
AAGAAGTATGGGACGAATCCCAGCACTGGAGAGAAACTTGATGGGAAGTCCTTGATCAAGCTGAACTTCG
CAAAGAACAGCGAAGGGCAGTACCACTGTCCAGTGCTGTATTCCGTGTTCACTGACAACACCCATATTGT
GGCCATCAGGACAACTGGCAATGTCTACACCTATGAGGCAGTGGAGCAGCTAAACATCAAGGCCAAGAAC
TTGCGGGATCTGTTGACTGATGAGCCCTTTTCCAGGCAAGACATCATCACCCTGCAGGACCCCACCAATT
TGGACAAATTCAATGTTAGCAACTTCTTCCATGTGAAGAATAACATGAGAATAATAGACCCAGATGAGGA
AAAGGCCAAACAAGACCCATCTTATTATTTGAAAAACACAAATTCGGAGACGAGAGAGACGCTACAGGAG
CTCTACAAAGAGTTCAAAGGAGATGAGATTTTAGCAGCTACCATGAGGCCACCTGAGAAGAAGAAGGTGG
ACCAACTGAATGCGGCCCACTACTCCACAGGGAAGGTCAGTGCATCCTTCACCTCTACTGCCATGGTGCC
CGAGACCACGCATGAAGCAGCTGTCATTGATGAAGATGTACTGCGCTACCAGTTTGTGAAGAAAAAGGGC
TATGTAAGGCTTCACACCAACAAGGGCGACCTTAACTTAGAGCTGCACTGTGACCTGACACCAAAAACCT
GTGAAAACTTCATCAAGCTCTGCAAGAAACAGTATTATGATGGTACCATCTTTCACAGGTCCATCAGGAA
CTTTGTGATCCAGGGCGGTGACCCCACAGGTACAGGCACAGGTGGAGAGTCATTCTGGGGCAAGCCTTTC
AAAGATGAGTTCCGTCCCAACCTTTCACACACGGGCCGTGGGGTGCTCAGCATGGCCAATTCGGGGCCCA
ACACCAACAAATCTCAGTTCTTCATCACATTCCGATCCTGCGCTTACCTGGATAAGAAGCATACCATCTT
TGGACGGGTTGTTGGGGGCTTTGACACGCTGACAGCCATGGAGAATGTGGAGAGTGACCCTAAAACTGAC
CGTCCTAAGGAGGAAGTGCTCATATGTACAACCACAGTGTTTGTGGACCCCTATGAGGAGGCTGATGCCC
AGATTGCCCAGGAACGGAAGAAGACACAGCATCAGGTGGATCCAGAGGCCAAGGTCAAGATGAGTCAGCC
CCAGCCTGGAAACCAGGGACCCCAGACATACCGCCAGGGGGTGGGCAAGTACATCCACCCTGCGGCCACG
AAACGATCAGCAGAGGAAGAACCATCGACCAGCACTGCCACCCCCACGGCCAAGAAAAGGCCCAGTCGGG
GCTTTGGGGACTTCAGCTCCTGGTAG

Translation (521 aa):
MGKRQHQKDKMYITCAEYTHFYGGRKPDISQTSFRRLPFDHCSLSLQPFVYPVCTPEGVVFDLLNIVPWL
KKYGTNPSTGEKLDGKSLIKLNFAKNSEGQYHCPVLYSVFTDNTHIVAIRTTGNVYTYEAVEQLNIKAKN
LRDLLTDEPFSRQDIITLQDPTNLDKFNVSNFFHVKNNMRIIDPDEEKAKQDPSYYLKNTNSETRETLQE
LYKEFKGDEILAATMRPPEKKKVDQLNAAHYSTGKVSASFTSTAMVPETTHEAAVIDEDVLRYQFVKKKG
YVRLHTNKGDLNLELHCDLTPKTCENFIKLCKKQYYDGTIFHRSIRNFVIQGGDPTGTGTGGESFWGKPF
KDEFRPNLSHTGRGVLSMANSGPNTNKSQFFITFRSCAYLDKKHTIFGRVVGGFDTLTAMENVESDPKTD
RPKEEVLICTTTVFVDPYEEADAQIAQERKKTQHQVDPEAKVKMSQPQPGNQGPQTYRQGVGKYIHPAAT
KRSAEEEPSTSTATPTAKKRPSRGFGDFSSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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