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Report for CCDS29286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29286.1 Public Mus musculus 18 Il17b 23 108 98 CCDS HistoryNCBI Gene:56069Re-query CCDS DB by CCDS ID:29286.1Re-query CCDS DB by GeneID:56069See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29286.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025471.3 ENSMUSP00000025471.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025471.3Link to Ensembl Protein Viewer:ENSMUSP00000025471.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000025471Re-query CCDS DB by Protein ID:ENSMUSP00000025471
Original member Current member NCBI NM_019508.1 NP_062381.1 Accepted alive Link to Nucleotide Sequence:NM_019508.1Link to Protein Sequence:NP_062381.1Re-query CCDS DB by Nucleotide ID:NM_019508Re-query CCDS DB by Protein ID:NP_062381Link to BLAST:NP_062381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062381.1 180 Q9QXT6 180 100% 0 0

Chromosomal Locations for CCDS 29286.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 61687984 61688004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61690118 61690407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61692206 61692437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGACTGGCCGCACAGCCTGCTCTTCCTCCTGGCCATCTCCATCTTCCTGGCGCCAAGCCACCCCCGGA
ACACCAAAGGCAAAAGAAAAGGGCAAGGGAGGCCCAGTCCCTTGGCCCCTGGGCCTCATCAGGTGCCGCT
GGACCTGGTGTCTCGAGTAAAGCCCTACGCTCGAATGGAAGAGTATGAGCGGAACCTTGGGGAGATGGTG
GCCCAGCTGAGGAACAGCTCCGAGCCAGCCAAGAAGAAATGTGAAGTCAATCTACAGCTGTGGTTGTCCA
ACAAGAGGAGCCTGTCCCCATGGGGCTACAGCATCAACCACGACCCCAGCCGCATCCCTGCGGACTTGCC
CGAGGCGCGGTGCCTATGTTTGGGTTGCGTGAATCCCTTCACCATGCAGGAGGACCGTAGCATGGTGAGC
GTGCCAGTGTTCAGCCAGGTGCCGGTGCGCCGCCGCCTCTGTCCTCAACCTCCTCGCCCTGGGCCCTGCC
GCCAGCGTGTCGTCATGGAGACCATCGCTGTGGGTTGCACCTGCATCTTCTGA

Translation (180 aa):
MDWPHSLLFLLAISIFLAPSHPRNTKGKRKGQGRPSPLAPGPHQVPLDLVSRVKPYARMEEYERNLGEMV
AQLRNSSEPAKKKCEVNLQLWLSNKRSLSPWGYSINHDPSRIPADLPEARCLCLGCVNPFTMQEDRSMVS
VPVFSQVPVRRRLCPQPPRPGPCRQRVVMETIAVGCTCIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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