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Report for CCDS20151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20151.1 Public Mus musculus 6 Hibadh 23 108 98 CCDS HistoryNCBI Gene:58875Re-query CCDS DB by CCDS ID:20151.1Re-query CCDS DB by GeneID:58875See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031788.8 ENSMUSP00000031788.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031788.8Link to Ensembl Protein Viewer:ENSMUSP00000031788.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031788Re-query CCDS DB by Protein ID:ENSMUSP00000031788
Original member Current member NCBI NM_145567.1 NP_663542.1 Accepted alive Link to Nucleotide Sequence:NM_145567.1Link to Protein Sequence:NP_663542.1Re-query CCDS DB by Nucleotide ID:NM_145567Re-query CCDS DB by Protein ID:NP_663542Link to BLAST:NP_663542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663542.1 335 Q99L13 335 100% 0 0

Chromosomal Locations for CCDS 20151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52546904 52547062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52548815 52548971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52556438 52556514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52557779 52557912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52619977 52620098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52622851 52622960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52630189 52630349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52640161 52640248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGCAGCCTCCTTGGGGTTCCGGGGAGCAGCCTCCGGCCTCTGGTACTGGAGCGGCCGGCGGCGGCCCG
TGGGCAGCCTTGCAGCGGTGTGTTCTAGGTCAATGGCTTCTAAGACTCCAGTTGGATTCATTGGACTGGG
AAACATGGGAAATCCAATGGCAAAAAATCTCATGAAACATGGCTATCCACTCATCCTCTATGACGTGTTC
CCTGATGTATGCAAGGAGTTTAAAGAGGCTGGGGAACAGGTAGCATCCTCCCCAGCAGAAGTAGCCGAAA
AGGCTGACAGGATTATCACAATGCTGCCCTCCAGTATGAATGCGGTAGAAGTTTATTCTGGAGCAAACGG
GATTCTAAAAAAAGTGAAGAAAGGCTCATTATTAATAGATTCCAGTACTATTGATCCTTCAGTTTCAAAA
GAATTGGCAAAAGAAGTTGAGAAAATGGGAGCTGTTTTCATGGACGCCCCTGTCTCCGGTGGTGTAGGAG
CTGCTCGGTCTGGAAACCTTACATTTATGGTGGGAGGAGTTGAAGATGAGTTTGCTGCTGCCCAAGAGTT
GCTGGAATGCATGGGCTCCAACGTGGTATACTGTGGAGCTGTTGGAACGGGGCAGTCTGCAAAGATCTGC
AACAACATGCTGTTGGCTATAAGTATGATTGGAACCGCTGAAGCTATGAACCTTGGAATCAGGTCAGGCC
TTGACCCAAAACTATTGGCTAAAATCCTGAATATGAGCTCCGGACGATGCTGGTCCAGCGACACTTACAA
CCCCGTACCCGGGGTTATGCATGGGGTCCCCTCATCCAATAACTACCAAGGTGGATTTGGAACAACACTA
ATGGCTAAGGATCTGGGATTGGCTCAAGACTCTGCCACCAGCACCAAGACCCCAATTCTCCTAGGAAGCC
TGGCCCATCAGATATACAGGATGATGTGTTCAAAGGGCTACTCAAAGAAAGACTTCTCATCTGTGTTCCA
GTATCTACGGGAGGAGGAGCCCTTCTGA

Translation (335 aa):
MAASLGFRGAASGLWYWSGRRRPVGSLAAVCSRSMASKTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVF
PDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSK
ELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKIC
NNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQGGFGTTL
MAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQYLREEEPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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