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Report for CCDS26779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26779.1 Public Mus musculus 13 Dhx29 23 108 98 CCDS HistoryNCBI Gene:218629Re-query CCDS DB by CCDS ID:26779.1Re-query CCDS DB by GeneID:218629See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038574.6 ENSMUSP00000035244.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038574.6Link to Ensembl Protein Viewer:ENSMUSP00000035244.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038574Re-query CCDS DB by Protein ID:ENSMUSP00000035244
Original member Current member NCBI NM_172594.3 NP_766182.2 Accepted alive Link to Nucleotide Sequence:NM_172594.3Link to Protein Sequence:NP_766182.2Re-query CCDS DB by Nucleotide ID:NM_172594Re-query CCDS DB by Protein ID:NP_766182Link to BLAST:NP_766182.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766182.2 1365 Q6PGC1 1365 100% 0 0

Chromosomal Locations for CCDS 26779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 112927793 112927973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112929627 112929700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112930842 112930955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112932507 112932636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112933084 112933229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112935469 112935597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112940373 112940499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112941673 112941831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112944494 112944659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112945070 112945193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112946763 112947374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112948212 112948355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112952803 112952979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112953674 112953814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112955148 112955292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112955400 112955517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112956382 112956466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112958913 112959001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112960119 112960247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112960323 112960398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112961061 112961285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112962734 112962870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112963263 112963356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112964447 112964740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112965215 112965346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112966536 112966632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 112969135 112969187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4098 nt):
ATGGGCGGCAAAAATAAGAAACACAAGGCGCCGGGAGCTGCGGCGATGCGGGCCGCCGTGTCTGCTTCCA
GAGCCAGAAGTGCAGAGGCCGGAGCTGTTGGGGAAGCCCAGAGCAAGAAGCCGGTGGCCAGGCCGGCGCC
CGCCGTCCCCACCGGCGCCCGGGAGCCCCGAGTGAAGCAAGGTCCAAAAATTTATAGTTTTAATTCTGCA
AATGATTCCGGTGGCTCTGCAAATCTGGACAAATCTATTTTGAAAGTGGTGATTAACAATAAACTAGAGC
AAAGGATTATCGGAGTGATCAATGAGCATAAAAAGCAGAACAGCGACAGGGGAGCGATCTCTGGAAGACT
GTCGGCTAAGAAGCTACAGGATTTATACATGGCTTTACAAGCGTTTTCCTTTAAGACTAAGGATATTGAA
GATGCCATGACCAATACACTCTTGCATGGAGGTGACCTTCATTCTGCCTTGGACTGGCTCTGCTTAAATC
TTTCCGATGATGCACTTCCTGAAGGATTCAGTCAAGAATTTGAAGAGCAGCAACCTAAAAGCAGGCCAAA
ATTCCAGTCTGTACAAATACAGGCTACTCTTTCACCTCCACAGCAGACGAAAACCAAAAGGCAGGAGGAA
GACCCTAAAATTAAGCCAAAAAAGGAAGAGACAACCGTGGAGGTGAATATGAAGGAGTGGATTTTGAGAT
ATGCTGAGCAACAGGACGAAGAGGAGAAGGGCGAGGGCTCTAAAGGCTTAGAGGAAGAAGAAAAGTTTGA
CCCCAACCAAAGGTACTTGAACCTTGCAGCCAGACTTCTGGACGCAAAGGAGCAAGCCGCCGCCTTCAAA
CTAGAAAAAAACAAGCAAGGCCAAAAAGAGGCTCAAGAGAAAATAAGAAAGTTCCAAAGAGAAATGGAAA
CTTTAGAAGACCATCCAATATTCAACCCAGCCATAAAGATTTCACATCAACAAAATGAGAAGAAAAAGCC
TGCTCCAGCCACAGAAGCTGAGAGTGCTTTAAACCTGAATTTATTTGAAAAATCTGCAGCTGCTACCGAG
GAAGAGAAAGGTAAAAAGAAAGAACCTCACGATGTAAGGAACTTTGACTACACTGCTCGAAGCTGGACTG
GCAAATCTCCCAAACAATTCCTCATCGACTGGGTCAGGAAGAATCTTCCCAAGAGTCCAAACCCCTCCTT
TGAGAAAGTTGCCGTAGGCAGATACTGGAAATGTAGGGTAAGGGTCGTCAGGTCTGAAGATGACGTGCTG
GTTGTGTGTCCTACAATCTTAACCGAGGACGGCATGCAAGCCCAGCACCTGGGAGCCACATTAGCCCTTT
ATCGGCTAGTGAAGGGGCAGTCTGTCCATCAGTTACTCCCTCCTACGTACCGGGATGTTTGGCTGGAGTG
GAGTGATGAAGAGAAGAAAAGGGAAGAACTCAATAAAATGGAAACCAACAAACCACGGGATCTTTTTATT
GCCAAGCTCTTGAATAAGTTGAAGCAGCAGCAGCAACAACAGCAGCAGCAGCGTCCTGAAAGCGAGAAAG
GGGGCTCCGAGGATCCCGAGGAATCCTGGGAAAACTTAGTTTCCGACGAAGATCTTGCTGCGCTGTCCTT
GGAGCCAACCAGTGCAGAAGACCTGGCACCTGTTAGGAGCCTCTTCAGGAGGCTACAGAGCACACCCAAG
TATCAGAGGCTCCTGAAGGAGAGACAGCAGCTACCTGTGTTCAAACACCGGGACTCAATTGTGGAAACTC
TGAAGAGGCACCGGGTGGTGGTGGTAGCAGGTGAAACGGGGAGTGGCAAGAGCACCCAGGTGCCACACTT
CCTGTTGGAAGATCTGCTGCTCGATGAGTGTGGAGCCAGGAAGTGTAACATAGTCTGCACCCAGCCCCGA
AGAATCTCGGCGGTGAGCTTAGCCACCAGGGTGTGCGAGGAGCTGGGCTGTGAGAGTGGCCCTGGAGGAA
GGAATTCTTTGTGTGGCTATCAGATCCGGATGGAATCTCGAGCTAGTGAATCTACCAGGCTACTGTATTG
TACAACCGGAGTTTTGCTAAGGAAACTTCAGGAAGATGGTCTTCTGGCTGATGTGTCTCATGTCATTGTC
GATGAGGTCCATGAGAGAAGTGTCCAGTCAGATTTCCTGCTCGTTATCCTGAAGGAGATTCTGCAGAAGC
GTTCTGACCTACACTTGATTCTGATGAGCGCCACCGTGGACAGTGACAAGTTCTCTACGTACTTCACACA
CTGTCCTATTCTCAGAATTTCAGGAAGAAGTTACCCTGTTGAGGTTTTTCATCTTGAAGACATAGTAGAA
GAAACAGGCTTCGTCCTGGAGAAAGACTCTGAGTATTGTCAGAAGTTTCTGGAAGAGGAGGAAGAAATTA
CCATTAATGTTACAAGTAAAGCTGGGGGAGTCAAAAAGTATCAGGAATACATCCCAGTTCAGAGTGGAGC
AAGTCCTGAATTAAACCCGTTCTACCAAAAGTACAGTAGCCGTACGCAGCATGCAATTCTCTACATGAAC
CCCCATAAAATCAACCTGGACCTCATTTTGGAGCTTCTTGTATACTTAGACAAAAGTCCTCAGTTCAGAA
ATATTGAAGGAGCAGTATTGATCTTCTTACCTGGCCTTGCTCACATTCAACAGTTGTATGACCTCCTGTC
AAGTGACAGAAGGTTTTATTCTGAGCGGTATCAAGTTATAGCTCTGCATTCAGTTCTCTCAACTCAAGAT
CAAGCGGCCGCCTTCATGTTCCCCCCTCCCGGGGTCAGGAAGATTGTCTTAGCAACAAACATTGCAGAGA
CAGGGATAACTATTCCTGATGTTGTGTTTGTCATTGACACTGGACGGACAAAAGAAAATAAGTACCATGA
AAGCAGCCAGATGAGCTCTTTGGTGGAGACCTTTGTCAGTAAAGCTAGTGCCCTACAGCGCCAGGGGAGA
GCCGGGAGGGTCCGGGATGGCTTCTGCTTTCGGCTGTACACAAGAGAAAGATTTGAAGGTTTTCTGGACT
ATTCTGTACCTGAGATCCTGCGCGTCCCTCTGGAGGAACTCTGTCTTCACATCATGAAGTGTGATCTGGG
CTCCCCTGAAGACTTCCTCTCCAAAGCCTTAGACCCTCCTCAGCTTCAAGTCATCAGCAACGCGATGAAC
TTACTCCGGAAAATTGGAGCCTGCGAACCCAATGAGCCTAAACTGACACCGCTGGGCCAGCACCTTGCCG
CTTTGCCTGTCAATGTCAAAATTGGCAAGATGCTCATTTTCGGAGCCATATTTGGCTGTCTCGAACCAGT
GGCAACACTGGCAGCCGTGATGACAGAGAAGTCTCCATTCATCACACCAATTGGTCGAAAGGATGAAGCG
GACCTTGCAAAGTCGTCTTTGGCTGTGGCCGACTCGGACCACCTCACGATCTACAATGCTTATCTAGGGT
GGAAGAAAGCCCAGCAAGAAGGAGGCTTCCGCTCTGAGATCTCATATTGCCAGAGGAACTTCCTAAACAG
AACGTCACTGTTGACACTCGAGGATGTGAAGCAGGAGTTAATGAAATTGGTGAAAGCTGCAGGATTTTCA
TCGTCTCCCAGCTGGGAGGGAAGGAAAGGGCCGCAGACGCTCTCTTTCCAGGACATTGCTCTTCTTAAAG
CTGTGCTGGCTGCTGGCCTGTACGACAGTGTGGGGAAGATCATGTGTACAAAGTCCGTGGACGTGACAGA
GAAGCTGGCGTGCATGGTGGAGACAGCCCAAGGCAAAGCTCAGGTGCACCCGTCCTCTGTAAACCGGGAC
CTACAAACCTACGGGTGGCTCTTGTACCAGGAGAAGGTGAGGTACACCAGAGTCTACCTGAGAGAGACGA
CCCTCATCACCCCTTTTCCAGTTTTGCTTTTTGGAGGTGACATAGAAGTCCAGCACCGAGAGCGGCTTCT
GTCTGTGGACGGCTGGATCTATTTTCAGGCCCCGGTAAAGATAGCTGTCATTTTTAAGCAGCTAAGAGTT
CTCATTGATTCTGTTTTAAGAAAAAAACTTGAAAATCCAAAGATGTCCCTTGAAAATGACAAGATTCTAC
AGATCATTACAGAATTGATAAAAACAGAGAATAATTGA

Translation (1365 aa):
MGGKNKKHKAPGAAAMRAAVSASRARSAEAGAVGEAQSKKPVARPAPAVPTGAREPRVKQGPKIYSFNSA
NDSGGSANLDKSILKVVINNKLEQRIIGVINEHKKQNSDRGAISGRLSAKKLQDLYMALQAFSFKTKDIE
DAMTNTLLHGGDLHSALDWLCLNLSDDALPEGFSQEFEEQQPKSRPKFQSVQIQATLSPPQQTKTKRQEE
DPKIKPKKEETTVEVNMKEWILRYAEQQDEEEKGEGSKGLEEEEKFDPNQRYLNLAARLLDAKEQAAAFK
LEKNKQGQKEAQEKIRKFQREMETLEDHPIFNPAIKISHQQNEKKKPAPATEAESALNLNLFEKSAAATE
EEKGKKKEPHDVRNFDYTARSWTGKSPKQFLIDWVRKNLPKSPNPSFEKVAVGRYWKCRVRVVRSEDDVL
VVCPTILTEDGMQAQHLGATLALYRLVKGQSVHQLLPPTYRDVWLEWSDEEKKREELNKMETNKPRDLFI
AKLLNKLKQQQQQQQQQRPESEKGGSEDPEESWENLVSDEDLAALSLEPTSAEDLAPVRSLFRRLQSTPK
YQRLLKERQQLPVFKHRDSIVETLKRHRVVVVAGETGSGKSTQVPHFLLEDLLLDECGARKCNIVCTQPR
RISAVSLATRVCEELGCESGPGGRNSLCGYQIRMESRASESTRLLYCTTGVLLRKLQEDGLLADVSHVIV
DEVHERSVQSDFLLVILKEILQKRSDLHLILMSATVDSDKFSTYFTHCPILRISGRSYPVEVFHLEDIVE
ETGFVLEKDSEYCQKFLEEEEEITINVTSKAGGVKKYQEYIPVQSGASPELNPFYQKYSSRTQHAILYMN
PHKINLDLILELLVYLDKSPQFRNIEGAVLIFLPGLAHIQQLYDLLSSDRRFYSERYQVIALHSVLSTQD
QAAAFMFPPPGVRKIVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQRQGR
AGRVRDGFCFRLYTRERFEGFLDYSVPEILRVPLEELCLHIMKCDLGSPEDFLSKALDPPQLQVISNAMN
LLRKIGACEPNEPKLTPLGQHLAALPVNVKIGKMLIFGAIFGCLEPVATLAAVMTEKSPFITPIGRKDEA
DLAKSSLAVADSDHLTIYNAYLGWKKAQQEGGFRSEISYCQRNFLNRTSLLTLEDVKQELMKLVKAAGFS
SSPSWEGRKGPQTLSFQDIALLKAVLAAGLYDSVGKIMCTKSVDVTEKLACMVETAQGKAQVHPSSVNRD
LQTYGWLLYQEKVRYTRVYLRETTLITPFPVLLFGGDIEVQHRERLLSVDGWIYFQAPVKIAVIFKQLRV
LIDSVLRKKLENPKMSLENDKILQIITELIKTENN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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