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Report for CCDS28987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28987.1 Public Mus musculus 17 Galm 23 108 98 CCDS HistoryNCBI Gene:319625Re-query CCDS DB by CCDS ID:28987.1Re-query CCDS DB by GeneID:319625See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039205.10 ENSMUSP00000040580.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039205.10Link to Ensembl Protein Viewer:ENSMUSP00000040580.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000039205Re-query CCDS DB by Protein ID:ENSMUSP00000040580
Original member Current member NCBI NM_176963.4 NP_795937.1 Accepted alive Link to Nucleotide Sequence:NM_176963.4Link to Protein Sequence:NP_795937.1Re-query CCDS DB by Nucleotide ID:NM_176963Re-query CCDS DB by Protein ID:NP_795937Link to BLAST:NP_795937.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_795937.1 342 Q8K157 342 100% 0 0

Chromosomal Locations for CCDS 28987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 80127716 80127905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80138013 80138167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80144980 80145186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80150089 80150170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80181561 80181702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80183192 80183366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 80183984 80184061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGTTTCGGTGACCAGAACCGTGTTTGGAGAGCTGCCCTCGGGGGGAGGGACAGTGGAGAAATTCCAGC
TTCGGTCAGACCAGCTGAGTGTGGACATCATCTCATGGGGCTGCACGATCACTGCTCTGCAGGTCAAAGA
CAGGCAGGGGAAAGCCTCAGACGTGGTGCTTGGCTTTGCGGAATTGGAAGGTTACCTCCAGAAGCAGCCC
TACTTTGGAGCAGTGGTTGGGAGGGTAGCCAACCGAATTGCCAAAGGAAGATTCACTATAGGTGGGAAGG
AGTACCACCTGCCAGTTAACAGAGAGCCCAACAGTCTCCATGGCGGATTCACGGGGTTTGATAAGGTCCT
CTGGACCCCTCAGGTGTTGACCAATGGCGTCCAGTTCTTTCGAGTCAGTCCAGATGGTGAGGAAGGCTAC
CCTGGAGAGCTGAAAGTCTGGGTGACATATACCCTGGATGGTGGGGAGCTTGTAATCAACTACAGAGCAC
AGGCCAGCCAGACCACTCCAGTTAATCTGACCAACCATTCTTATTTCAACCTAGCAGGCCAGGGCTCCCC
AAATATATATGACCATGAAGTCACCATTGCAGCAGATGCATATTTGCCCGTGGATGAAACTCTGATTCCA
ACAGGAGTCATTGCTCCAGTGGAAGGAACTGCCTTCGACCTGAGAAAGCCAGTGGAGCTTGGAACACACC
TGCAGGATTACCACATCCATGGTTTCGACCATAATTTCTGTCTGAAGGAGTCAAAAGAAAAGAAGTTTTG
TGCAAGGGTGCGTCACGCTGCAAGTGGGAGGATCCTGGAAGTATATACCACACAACCAGGCGTCCAGTTT
TACACAGGAAACTTCTTGGATGGTACTCTGAAAGGCAAGAACGGTGCGGTGTATCCCAAGCACTCAGGTC
TCTGCCTCGAGACCCAGAACTGGCCTGATTCGGTCAATCAGCCCCAGTTCCCTCCGGCGCTGCTGAGGCC
TGGAGAGGAATACAACCACACTACCTGGTTCAAGTTCTCTGTTGCTTAA

Translation (342 aa):
MVSVTRTVFGELPSGGGTVEKFQLRSDQLSVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQKQP
YFGAVVGRVANRIAKGRFTIGGKEYHLPVNREPNSLHGGFTGFDKVLWTPQVLTNGVQFFRVSPDGEEGY
PGELKVWVTYTLDGGELVINYRAQASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIAADAYLPVDETLIP
TGVIAPVEGTAFDLRKPVELGTHLQDYHIHGFDHNFCLKESKEKKFCARVRHAASGRILEVYTTQPGVQF
YTGNFLDGTLKGKNGAVYPKHSGLCLETQNWPDSVNQPQFPPALLRPGEEYNHTTWFKFSVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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